Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CFBP5506_RS07980 Genome accession   NZ_CP122962
Coordinates   1607085..1608758 (-) Length   557 a.a.
NCBI ID   WP_080790325.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5506     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1602085..1613758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5506_RS07960 (CFBP5506_07960) - 1602174..1603103 (+) 930 WP_162927326.1 DMT family transporter -
  CFBP5506_RS07965 (CFBP5506_07965) - 1603298..1603831 (+) 534 WP_080790328.1 GNAT family N-acetyltransferase -
  CFBP5506_RS07970 (CFBP5506_07970) - 1603838..1604731 (-) 894 WP_080790327.1 aminoglycoside phosphotransferase family protein -
  CFBP5506_RS07975 (CFBP5506_07975) ligA 1604796..1606970 (-) 2175 WP_080790326.1 NAD-dependent DNA ligase LigA -
  CFBP5506_RS07980 (CFBP5506_07980) recN 1607085..1608758 (-) 1674 WP_080790325.1 DNA repair protein RecN Machinery gene
  CFBP5506_RS07985 (CFBP5506_07985) - 1608774..1609640 (-) 867 WP_080790324.1 outer membrane protein assembly factor BamD -
  CFBP5506_RS07990 (CFBP5506_07990) lpxC 1609874..1610833 (-) 960 WP_080790323.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  CFBP5506_RS07995 (CFBP5506_07995) ftsZ 1611098..1612855 (-) 1758 WP_080790322.1 cell division protein FtsZ -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 60215.98 Da        Isoelectric Point: 5.0107

>NTDB_id=744691 CFBP5506_RS07980 WP_080790325.1 1607085..1608758(-) (recN) [Agrobacterium tumefaciens strain CFBP5506]
MLVQLSIRDIVLIERLDLGFEAGLSVLTGETGAGKSILLDSLSLALGGRGDGGLVRHGEDKGQVTATFEVPNNHPTRLLL
RENGLDDDGDLIFRRVQSSDGRTKAYVNDQAVSVQMMRQLGQLLVEIHGQHDDRALVDTDAHRTLLDAFAGLSDEARAVQ
SLYRTWKDAERALKTHRAKVEAAAREADYLRSSVEELETLSPRDGEEDELAERRAVMQKSERIAGDIAEASEFLNGNTSP
VPVIASMMRRLERKSHEAPGLLEDTVQLLDAALDSLSNAQMEVEAALRRTEFDPRELERVEERLFALRAAGRKYNVAVPD
LPALAEKMTADLADLDAGEEKLGKLEANLGVVKADFDRAAQSLSDKRRHAAEALSNAVMAELPALKLERARFTVEVTSDP
EQATADGIDTVEFHVQTNPGTRPGPIMKVASGGELSRFLLALKVALADRGSAPTLVFDEIDTGVGGAVADAIGQRLRRLS
KTVQVLSVTHAPQVAARAATHLLISKGPSGDGSERIATRVATMEPKHRTEEIARMLAGASVTDEARAAAARLLAAKD

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=744691 CFBP5506_RS07980 WP_080790325.1 1607085..1608758(-) (recN) [Agrobacterium tumefaciens strain CFBP5506]
ATGCTGGTCCAGCTCTCGATTCGCGATATCGTTCTCATCGAAAGGCTCGACCTCGGTTTCGAGGCGGGCCTTTCCGTGTT
GACGGGCGAGACGGGTGCGGGCAAATCCATTCTTCTCGATAGTCTCTCGCTGGCGCTTGGTGGCCGCGGCGATGGCGGCC
TTGTGCGGCACGGCGAGGACAAGGGGCAGGTGACGGCCACCTTCGAAGTCCCGAACAATCACCCGACACGGCTTCTCCTG
CGCGAGAACGGTCTCGACGATGACGGCGACCTGATTTTCCGGCGGGTGCAATCCTCCGACGGTCGCACCAAGGCCTATGT
CAACGATCAGGCCGTGAGTGTGCAGATGATGCGCCAGCTCGGGCAATTGCTGGTCGAAATTCATGGTCAGCATGATGATC
GCGCGCTTGTCGATACTGATGCGCACCGCACGCTGCTGGACGCCTTTGCCGGGCTGAGCGATGAGGCTCGCGCTGTTCAG
AGCCTATACCGCACCTGGAAGGATGCCGAACGCGCGCTGAAGACGCACCGCGCCAAGGTGGAGGCGGCGGCGCGCGAGGC
GGATTACCTTCGCTCGTCCGTCGAGGAACTGGAGACGCTCTCGCCGCGCGACGGCGAAGAGGATGAGCTGGCCGAGCGCC
GGGCGGTGATGCAGAAATCCGAACGCATTGCCGGCGATATCGCGGAGGCCAGCGAGTTCCTGAACGGCAATACGTCGCCT
GTGCCTGTCATCGCGTCGATGATGCGGCGTCTGGAGCGCAAGAGCCACGAAGCGCCGGGATTGCTGGAAGACACCGTACA
ATTGCTGGATGCCGCGCTGGACAGCCTCTCCAACGCACAGATGGAAGTGGAGGCGGCCCTGCGTCGCACCGAATTCGATC
CGCGTGAGCTGGAGCGGGTGGAGGAGCGGCTGTTTGCGCTGCGCGCCGCCGGGCGTAAATACAATGTCGCCGTACCTGAC
TTGCCGGCTCTCGCCGAAAAAATGACGGCCGATCTCGCCGATCTCGATGCCGGTGAAGAAAAGCTTGGCAAGCTCGAGGC
CAATCTCGGCGTGGTGAAGGCCGATTTCGACCGTGCCGCGCAATCGCTTTCCGACAAACGCCGCCATGCGGCGGAAGCGC
TTTCCAACGCGGTGATGGCAGAACTTCCGGCGCTGAAGCTGGAACGGGCGCGGTTTACCGTCGAAGTGACCTCCGATCCC
GAACAGGCGACGGCGGACGGTATCGATACGGTGGAATTCCACGTCCAGACCAACCCGGGCACGCGCCCCGGTCCGATCAT
GAAAGTGGCATCGGGCGGCGAATTGTCCCGCTTCCTGCTGGCGCTGAAAGTGGCGCTGGCGGATCGTGGTTCGGCGCCGA
CCTTGGTGTTCGACGAAATCGATACGGGCGTTGGCGGCGCTGTGGCGGATGCCATCGGCCAGCGGCTGCGCCGCCTGTCG
AAAACCGTGCAGGTCCTGTCCGTCACCCATGCGCCGCAGGTGGCGGCGCGGGCGGCCACTCATCTTCTCATTTCCAAGGG
CCCATCCGGGGACGGCAGCGAGCGTATCGCGACGCGCGTGGCCACCATGGAGCCGAAGCACCGCACCGAAGAGATTGCCC
GTATGCTTGCCGGCGCGTCGGTGACGGACGAGGCTAGGGCTGCGGCGGCTCGCCTGCTGGCGGCCAAGGACTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(14-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

34.596

100

0.361