Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CFBP5506_RS00045 Genome accession   NZ_CP122962
Coordinates   7630..9180 (-) Length   516 a.a.
NCBI ID   WP_080791497.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5506     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2630..14180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5506_RS00015 (CFBP5506_00015) rdgB 2841..3485 (-) 645 WP_080791501.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  CFBP5506_RS00020 (CFBP5506_00020) rph 3503..4219 (-) 717 WP_080791500.1 ribonuclease PH -
  CFBP5506_RS00025 (CFBP5506_00025) hrcA 4355..5446 (+) 1092 WP_080791499.1 heat-inducible transcriptional repressor HrcA -
  CFBP5506_RS00030 (CFBP5506_00030) grpE 5561..6196 (+) 636 WP_080791498.1 nucleotide exchange factor GrpE -
  CFBP5506_RS00035 (CFBP5506_00035) ptsN 6277..6738 (-) 462 WP_003503792.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CFBP5506_RS00040 (CFBP5506_00040) raiA 6822..7394 (-) 573 WP_077984405.1 ribosome-associated translation inhibitor RaiA -
  CFBP5506_RS00045 (CFBP5506_00045) rpoN/rpoN1 7630..9180 (-) 1551 WP_080791497.1 RNA polymerase factor sigma-54 Machinery gene
  CFBP5506_RS00050 (CFBP5506_00050) lptB 9446..10255 (-) 810 WP_080791496.1 LPS export ABC transporter ATP-binding protein -
  CFBP5506_RS00055 (CFBP5506_00055) - 10265..10825 (-) 561 WP_169538607.1 LptA/OstA family protein -
  CFBP5506_RS00060 (CFBP5506_00060) lptC 10842..11507 (-) 666 WP_080791495.1 LPS export ABC transporter periplasmic protein LptC -
  CFBP5506_RS00065 (CFBP5506_00065) sppA 11742..12695 (+) 954 WP_080791494.1 signal peptide peptidase SppA -
  CFBP5506_RS00070 (CFBP5506_00070) - 12722..13024 (+) 303 WP_003493505.1 integration host factor subunit beta -
  CFBP5506_RS00075 (CFBP5506_00075) - 13090..13431 (+) 342 WP_162927450.1 LapA family protein -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 56822.01 Da        Isoelectric Point: 4.4391

>NTDB_id=744671 CFBP5506_RS00045 WP_080791497.1 7630..9180(-) (rpoN/rpoN1) [Agrobacterium tumefaciens strain CFBP5506]
MALSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLSSDAPVDAESFGDADSESSERS
ATVTSDSDDWYGDRAANLGEQLDTSFENVFPDDAEPRKADAPELAGQWKSMPGQESGESYDLDDFVAARQSLGDHLNQQL
PLAISAAEDRMIADALIGQLDETGYIAADAVDDVAERLGATPSAVENVLKTLQGFDPPGVFSRSLSECLSIQLAQKDRLD
PAMRAFVDNLELLAKRDFASLKKICGVDEEDLLDMLAEIRSLNPRPGAGYDSMVSETIVPDIIVRPSSTGGWLVEINPET
LPRVLINQSYFAEVSKHKARAGEDQDFLAECMQTAHWLTRSLDQRARTIMKVATEIVRQQDAFLVNGVDQLRPLNLKTVA
DAIKMHESTVSRVTTKKYMLTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAAEAVLSDDDIVDNLKKSG
VDIARRTVAKYREAMNIPSSVQRRREKKALAKLAVF

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=744671 CFBP5506_RS00045 WP_080791497.1 7630..9180(-) (rpoN/rpoN1) [Agrobacterium tumefaciens strain CFBP5506]
ATGGCATTGTCTGCCAGCCTTTTGCTGCGTCAAAACCAGTCTCTCGTGATGACACCACAACTGATGCAGTCCATCCAGCT
GCTTCAGATGACGCATTTCGAGCTGACGCAGTTCATCGCGCAGGAGGTGGAGCGCAATCCGCTGCTGGAAATTGCGGCAA
ACGATGGCGATTTAAGCAGCGATGCACCTGTAGACGCGGAAAGTTTTGGCGACGCCGATAGCGAAAGTTCGGAGAGATCC
GCCACGGTGACGTCAGACAGTGACGACTGGTACGGCGACCGCGCCGCAAATCTCGGCGAGCAACTTGACACCAGCTTTGA
GAACGTCTTTCCCGACGATGCCGAGCCCAGAAAGGCCGATGCGCCCGAACTGGCCGGCCAATGGAAATCCATGCCTGGCC
AGGAGTCGGGAGAAAGTTACGATCTCGACGATTTCGTTGCGGCCAGACAGAGCCTCGGCGACCATCTCAATCAGCAACTG
CCGCTCGCCATATCCGCCGCCGAGGACCGGATGATCGCCGATGCGCTGATCGGCCAGCTTGACGAAACCGGCTATATTGC
GGCGGATGCCGTCGATGATGTCGCTGAACGACTGGGAGCGACCCCGTCGGCTGTAGAGAACGTTCTGAAGACGCTTCAGG
GCTTCGACCCACCGGGTGTATTTTCCCGTTCCTTAAGCGAATGCCTGTCGATCCAGCTTGCCCAGAAGGACCGGCTCGAC
CCGGCCATGCGGGCTTTCGTCGACAATCTGGAACTTCTGGCGAAACGTGACTTCGCCTCTTTGAAAAAAATCTGCGGCGT
CGATGAGGAAGATCTCCTCGATATGCTGGCGGAAATCCGCTCGCTCAATCCCCGCCCCGGCGCCGGGTACGATTCAATGG
TTTCGGAGACCATCGTTCCCGATATTATCGTTCGCCCCTCCTCCACCGGCGGCTGGCTGGTGGAAATCAATCCAGAGACC
CTGCCGCGCGTGCTCATCAATCAGAGTTACTTCGCCGAGGTGTCGAAACATAAGGCGCGCGCGGGCGAGGATCAGGATTT
TCTGGCCGAATGCATGCAAACGGCCCATTGGCTGACCCGCAGCCTCGACCAGCGCGCCCGGACGATCATGAAGGTGGCGA
CGGAAATCGTTCGCCAGCAGGATGCCTTCCTCGTCAATGGTGTCGACCAGCTGCGCCCGCTGAACCTCAAGACGGTGGCC
GACGCCATCAAGATGCATGAATCCACCGTCAGCCGGGTGACAACCAAAAAATACATGCTGACGCCGCGCGGGCTGTTCGA
GCTGAAATATTTCTTCAGCGTCTCGATCAGCGCCGTGGAAGGCGGAGACAGCCATTCGGCGGAAGCGGTGCGTCACCGCA
TCAAGGCCATGATCGCGCAGGAAGCCGCCGAGGCGGTTCTTTCAGACGATGATATCGTCGACAACCTGAAAAAGAGCGGC
GTAGACATCGCCCGGCGCACCGTCGCCAAATATCGGGAGGCGATGAACATCCCCTCCTCCGTGCAGAGGCGTCGGGAAAA
GAAGGCGCTGGCCAAGTTGGCTGTATTCTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-330)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(7-51)

Sigma-54, DNA binding domain (Sigma54_DBD)

(346-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

35.66

100

0.366