Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QBD03_RS10455 Genome accession   NZ_CP122959
Coordinates   2112431..2114179 (-) Length   582 a.a.
NCBI ID   WP_011375527.1    Uniprot ID   Q38UI2
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2107431..2119179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS10435 (QBD03_10435) - 2108544..2110013 (+) 1470 WP_280102873.1 ABC transporter permease -
  QBD03_RS10440 (QBD03_10440) - 2110029..2110691 (+) 663 WP_011375523.1 ABC transporter ATP-binding protein -
  QBD03_RS10445 (QBD03_10445) - 2110785..2111252 (+) 468 WP_280102874.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QBD03_RS10450 (QBD03_10450) - 2111316..2111969 (-) 654 WP_011375525.1 MIP family channel protein -
  QBD03_RS10455 (QBD03_10455) recQ 2112431..2114179 (-) 1749 WP_011375527.1 DNA helicase RecQ Machinery gene
  QBD03_RS10460 (QBD03_10460) - 2114292..2114852 (-) 561 WP_016265782.1 TMEM175 family protein -
  QBD03_RS10465 (QBD03_10465) - 2114964..2115737 (+) 774 WP_280102875.1 hypothetical protein -
  QBD03_RS10470 (QBD03_10470) - 2115751..2116233 (-) 483 WP_025016166.1 DUF3955 domain-containing protein -
  QBD03_RS10475 (QBD03_10475) - 2116553..2116867 (+) 315 WP_025016165.1 SemiSWEET family transporter -
  QBD03_RS10480 (QBD03_10480) - 2117292..2117675 (+) 384 WP_280102876.1 YxeA family protein -
  QBD03_RS10485 (QBD03_10485) - 2117718..2118359 (-) 642 WP_035146842.1 DNA alkylation repair protein -
  QBD03_RS10490 (QBD03_10490) - 2118369..2118980 (-) 612 WP_280102877.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65752.38 Da        Isoelectric Point: 5.1646

>NTDB_id=744670 QBD03_RS10455 WP_011375527.1 2112431..2114179(-) (recQ) [Latilactobacillus sakei strain HUP1]
MQAQAVLKEKFGYDHFREGQADVIESLLAGTNVLAIMPTGGGKSLCYQIPALMLPGLTLVVSPLISLMKDQVDALNENGI
PATFINSTLTQGEVQERFNQAARGEVKLLYVSPERLDSDYFLADLAELTIDLIAVDEAHCISQWGHDFRPSYLRLTDTIK
SMRQQPTIVALTATATSQVADDIMLRLGIQHEVKTGFSRENLAFQVVKNQNSDRYLIDYLKVNKQKSGIIYASTRKEVER
LTKLIEKAKLAVTMYHGGLNEMVRRQNQEDFLYDRKPIMVATNAFGMGIDKSNVRFVVHAQIPGSLEAYYQEAGRAGRDG
LPSEAILLFKVNDVQIQHFFIDQSEMDDENKQREYAKLQEMTQYANTQQCLQQYIVNYFDDDCEKCGRCSNCLDTRESQD
ITIDVQKVLSCIKRMDERFGKVMVAQVLTGSKNQKIMQFRFDELPTYGLMRGDSQKEVSGLIDYLVASGYLRASGGQYPV
LQITLAGVKVLKGQEKVSRKMAAKVQKTLPEDNELFERLRELRRDLAEEQGVPPFVIFSDKTLYSMCEIMPTSLTEMLDV
KGVGENKLEKYGELFLDILVAE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=744670 QBD03_RS10455 WP_011375527.1 2112431..2114179(-) (recQ) [Latilactobacillus sakei strain HUP1]
ATGCAGGCACAAGCAGTACTAAAAGAAAAATTTGGCTATGATCATTTTAGAGAAGGCCAAGCAGATGTGATTGAATCCTT
GCTAGCAGGGACCAATGTATTGGCGATTATGCCGACTGGTGGCGGGAAGTCGTTATGTTACCAGATTCCAGCGCTGATGT
TACCGGGGTTAACGCTAGTCGTTTCACCATTGATTTCGCTGATGAAAGATCAAGTCGACGCGCTCAACGAAAATGGGATT
CCGGCAACGTTTATCAACAGTACCTTGACGCAAGGTGAGGTGCAGGAGCGCTTCAATCAGGCCGCACGTGGTGAAGTCAA
GTTGCTTTATGTGTCGCCGGAACGGTTGGACTCTGATTACTTTTTAGCGGATTTAGCCGAATTAACGATTGATTTGATTG
CCGTTGATGAAGCGCATTGTATCTCGCAATGGGGGCACGATTTTCGACCTAGTTATCTACGCTTAACGGATACAATTAAA
AGCATGCGACAACAACCAACAATTGTCGCACTAACGGCGACTGCTACGTCACAAGTAGCTGATGATATTATGTTGCGCTT
AGGGATTCAACATGAAGTTAAGACTGGTTTTTCACGGGAAAACCTGGCCTTTCAAGTGGTTAAAAACCAAAATAGTGATC
GCTACTTAATCGATTATTTAAAGGTTAATAAGCAAAAATCCGGCATCATCTATGCTAGTACACGTAAAGAAGTTGAACGG
CTCACGAAGCTGATCGAAAAAGCGAAACTGGCAGTCACAATGTATCATGGCGGCTTAAATGAAATGGTGCGCCGGCAAAA
TCAAGAGGATTTTCTCTACGATCGTAAACCGATTATGGTCGCCACGAATGCTTTTGGGATGGGGATTGATAAGAGTAATG
TGCGATTTGTCGTGCATGCCCAAATTCCCGGCAGCTTAGAAGCTTATTATCAAGAAGCAGGTCGGGCTGGCCGTGATGGC
TTACCAAGTGAGGCCATCTTACTGTTTAAAGTCAATGATGTCCAAATCCAACATTTTTTCATCGATCAATCAGAGATGGA
CGATGAAAATAAGCAACGGGAATACGCTAAGTTACAAGAAATGACACAATACGCCAACACGCAACAGTGCTTGCAACAAT
ATATCGTCAATTATTTTGATGATGACTGTGAAAAATGTGGCCGTTGTAGCAATTGTCTTGATACACGCGAATCACAAGAC
ATTACAATTGATGTCCAAAAGGTTTTATCGTGCATCAAGCGAATGGATGAACGTTTCGGCAAAGTAATGGTTGCGCAAGT
CTTGACGGGCTCTAAGAATCAGAAGATTATGCAGTTCCGCTTTGATGAATTGCCAACATACGGTTTGATGCGGGGCGATT
CACAAAAAGAAGTCAGTGGTTTGATTGATTACTTAGTCGCATCAGGCTATTTACGGGCTTCTGGTGGTCAATATCCCGTT
TTACAGATCACGTTGGCGGGCGTCAAAGTACTTAAGGGTCAAGAAAAAGTGTCGCGTAAAATGGCTGCTAAGGTTCAAAA
AACATTGCCTGAAGACAATGAGTTATTCGAACGCTTACGCGAATTACGCCGTGATTTAGCTGAAGAACAGGGTGTACCGC
CGTTTGTAATCTTCTCAGATAAGACGTTGTATTCAATGTGTGAAATTATGCCAACCTCACTGACTGAAATGTTAGATGTT
AAAGGTGTCGGGGAGAATAAATTAGAAAAATATGGTGAATTATTCTTGGATATTTTAGTTGCTGAGTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(513-579)

RecQ zinc-binding (RecQ_Zn_bind)

(332-393)

DEAD/DEAH box helicase (DEAD)

(19-180)

Helicase conserved C-terminal domain (Helicase_C)

(214-319)

RQC domain (RQC)

(396-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38UI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

52.332

99.485

0.521