Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   QBD03_RS08385 Genome accession   NZ_CP122959
Coordinates   1688307..1689113 (-) Length   268 a.a.
NCBI ID   WP_016265510.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683307..1694113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS08360 (QBD03_08360) - 1683703..1684134 (+) 432 WP_280102705.1 GNAT family N-acetyltransferase -
  QBD03_RS08365 (QBD03_08365) - 1684210..1684683 (+) 474 WP_099947719.1 hypothetical protein -
  QBD03_RS08370 (QBD03_08370) - 1684816..1686525 (+) 1710 WP_280102706.1 glycosyltransferase family 8 protein -
  QBD03_RS08375 (QBD03_08375) - 1686594..1687130 (-) 537 WP_011375166.1 DUF402 domain-containing protein -
  QBD03_RS08380 (QBD03_08380) mutY 1687217..1688320 (-) 1104 WP_280103374.1 A/G-specific adenine glycosylase -
  QBD03_RS08385 (QBD03_08385) recX 1688307..1689113 (-) 807 WP_016265510.1 recombination regulator RecX Regulator
  QBD03_RS08390 (QBD03_08390) - 1689115..1689294 (-) 180 WP_011375169.1 hypothetical protein -
  QBD03_RS08395 (QBD03_08395) rlmD 1689561..1690952 (+) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  QBD03_RS08400 (QBD03_08400) - 1691201..1691962 (-) 762 WP_280102707.1 DUF4931 domain-containing protein -
  QBD03_RS08405 (QBD03_08405) galE 1691992..1692984 (-) 993 WP_280102708.1 UDP-glucose 4-epimerase GalE -
  QBD03_RS08410 (QBD03_08410) - 1693099..1694055 (+) 957 WP_182159919.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31069.99 Da        Isoelectric Point: 6.0698

>NTDB_id=744663 QBD03_RS08385 WP_016265510.1 1688307..1689113(-) (recX) [Latilactobacillus sakei strain HUP1]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=744663 QBD03_RS08385 WP_016265510.1 1688307..1689113(-) (recX) [Latilactobacillus sakei strain HUP1]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGCGACATTCAAA
AAGAAGATGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCGGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCATTGACGTTATATACAGATGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAGCAAAAGATTAAACAAGGCTT
GATGCAAAAGGGTTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGCGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

37.643

98.134

0.369