Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QBD03_RS06575 Genome accession   NZ_CP122959
Coordinates   1354052..1355782 (-) Length   576 a.a.
NCBI ID   WP_011374848.1    Uniprot ID   Q38WI2
Organism   Latilactobacillus sakei strain HUP1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349052..1360782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS06555 (QBD03_06555) - 1349273..1349917 (-) 645 WP_162100808.1 HD domain-containing protein -
  QBD03_RS06560 (QBD03_06560) manA 1349991..1350965 (-) 975 WP_280102580.1 mannose-6-phosphate isomerase, class I -
  QBD03_RS06565 (QBD03_06565) - 1351067..1352077 (-) 1011 WP_162100810.1 serine hydrolase domain-containing protein -
  QBD03_RS06570 (QBD03_06570) rcrQ 1352175..1354052 (-) 1878 WP_011374847.1 ABC transporter ATP-binding protein Regulator
  QBD03_RS06575 (QBD03_06575) rcrP 1354052..1355782 (-) 1731 WP_011374848.1 ABC transporter ATP-binding protein Regulator
  QBD03_RS06580 (QBD03_06580) - 1355806..1356447 (-) 642 WP_016265275.1 TetR family transcriptional regulator -
  QBD03_RS06585 (QBD03_06585) - 1356652..1357380 (+) 729 WP_011374850.1 ion transporter -
  QBD03_RS06590 (QBD03_06590) - 1357578..1357778 (-) 201 WP_004270328.1 cold-shock protein -
  QBD03_RS06595 (QBD03_06595) - 1357979..1358635 (+) 657 WP_280103369.1 type II CAAX endopeptidase family protein -
  QBD03_RS06600 (QBD03_06600) - 1358656..1358976 (+) 321 WP_112206153.1 hypothetical protein -
  QBD03_RS06605 (QBD03_06605) - 1358969..1359151 (+) 183 WP_016265279.1 hypothetical protein -
  QBD03_RS06610 (QBD03_06610) - 1359148..1359843 (-) 696 WP_011374854.1 YoaK family protein -
  QBD03_RS06615 (QBD03_06615) mgsA 1359927..1360349 (-) 423 WP_011374855.1 methylglyoxal synthase -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63754.90 Da        Isoelectric Point: 6.4076

>NTDB_id=744645 QBD03_RS06575 WP_011374848.1 1354052..1355782(-) (rcrP) [Latilactobacillus sakei strain HUP1]
MIKLAKKRMSGLAVFGAVLFMVIQVVSNLYLPNLTSDIVNNGIAKGDIDYIWQAGFKMLGFSLISILAAICNVYLAAKTS
QGLGQKLRSDIYRKVINFSHDEMDQVGTSSLITRTTNDVVQIQNVAMMFLRMMIMAPIMLIGASFLAYQKNAQLTSIFVV
VLPLMAIFIGVVMYFAVPLFKAMQKKTDRINLVFREGLTGVRVIRAFRRDKFEQERFDDANLDYTQNAKKVYSIMSVMLP
VMTLIMSGTNIAITWMGGHLIADQAMQVGNLLAFMTYAMQILMSFMMLSMVFVFIPRAQASAVRINEVLDLQTPIENPEN
PKSFTDQTVSLAFDNVNFRYQNAEKLALEKIDFQASAGQTVAIIGGTGSGKSTLVNLIPRFYDVEAGQVQVDGLNVKDVT
LHDIHEQVAFVPQKANLFTGTIRENMQYGNPDATDDQIWHALEIAQSKDFVSELDGGLDSHVEQGGGNFSGGQRQRLAIA
RALVKRASVYVFDDSFSALDFKTDALLRKALKEDTEIQKSVVVIVGQRVSTVADADTILVLDEGQMVGKGTHAQLKATNA
TYQEIINSQIREGDEA

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=744645 QBD03_RS06575 WP_011374848.1 1354052..1355782(-) (rcrP) [Latilactobacillus sakei strain HUP1]
ATGATTAAACTTGCAAAAAAGAGAATGTCGGGCTTAGCCGTTTTCGGTGCTGTCTTATTCATGGTGATACAAGTTGTCAG
TAACTTGTATCTCCCTAATTTGACGTCTGATATTGTCAATAACGGGATTGCCAAAGGAGATATTGATTATATCTGGCAAG
CCGGCTTTAAAATGCTCGGCTTTTCATTGATCAGTATCCTAGCCGCAATCTGTAACGTTTATTTAGCCGCTAAGACATCA
CAAGGTCTGGGGCAAAAATTACGATCAGATATTTATCGAAAGGTCATCAATTTCTCACACGATGAAATGGACCAGGTGGG
GACCTCTTCACTGATTACACGGACGACCAATGATGTTGTTCAAATTCAAAATGTGGCAATGATGTTCTTACGAATGATGA
TCATGGCCCCTATTATGTTGATTGGTGCCAGCTTCTTGGCTTACCAAAAGAACGCGCAATTAACATCAATCTTCGTCGTT
GTCTTACCATTGATGGCAATCTTTATCGGTGTCGTGATGTACTTTGCCGTACCACTTTTCAAGGCAATGCAAAAGAAGAC
TGACCGGATTAACTTAGTTTTCCGTGAAGGCTTAACGGGGGTGCGGGTAATCCGTGCATTCCGTCGCGATAAGTTCGAAC
AGGAACGTTTTGACGATGCGAACTTAGATTACACACAAAATGCTAAAAAGGTCTACAGTATCATGTCTGTCATGTTACCT
GTGATGACATTGATTATGAGTGGGACAAACATTGCAATCACTTGGATGGGTGGTCACTTAATTGCTGATCAAGCCATGCA
AGTGGGGAACTTATTAGCCTTCATGACTTATGCGATGCAAATCTTAATGAGTTTCATGATGCTTTCAATGGTTTTCGTCT
TCATTCCACGGGCACAAGCATCAGCCGTTCGGATTAATGAAGTCTTAGATTTACAAACACCAATTGAAAATCCAGAAAAT
CCCAAGAGCTTTACAGATCAAACTGTCAGCTTGGCCTTTGATAATGTTAACTTCCGCTACCAAAATGCAGAAAAATTAGC
CTTAGAGAAGATTGATTTCCAAGCATCTGCTGGTCAAACCGTTGCGATTATCGGGGGGACTGGTTCAGGTAAATCAACCT
TGGTTAACTTGATTCCGCGTTTTTACGACGTTGAAGCCGGTCAAGTCCAAGTTGATGGGTTAAATGTCAAAGATGTGACA
TTGCATGATATTCATGAACAAGTCGCATTTGTACCGCAAAAAGCCAATCTTTTTACAGGGACGATTCGCGAAAATATGCA
ATATGGGAATCCGGATGCAACTGATGATCAGATTTGGCATGCACTTGAAATTGCCCAATCGAAGGATTTCGTTAGCGAAC
TTGATGGTGGCTTAGACAGTCACGTTGAACAAGGTGGCGGTAACTTCTCAGGTGGTCAACGTCAACGATTAGCGATTGCC
CGGGCATTAGTTAAACGCGCATCAGTTTATGTCTTTGATGATTCATTTTCAGCTTTAGATTTCAAGACGGATGCCCTTTT
ACGCAAAGCCTTGAAGGAAGATACTGAAATTCAAAAGAGTGTCGTCGTCATTGTTGGACAACGGGTCTCAACTGTGGCTG
ATGCCGATACAATCTTGGTCTTAGATGAAGGCCAAATGGTTGGTAAAGGCACGCATGCCCAATTAAAGGCAACAAATGCA
ACTTACCAAGAAATTATCAATTCACAAATCAGAGAGGGGGATGAAGCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(348-495)

ABC transporter transmembrane region (ABC_membrane)

(15-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.376

97.917

0.415