Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QBD03_RS06570 Genome accession   NZ_CP122959
Coordinates   1352175..1354052 (-) Length   625 a.a.
NCBI ID   WP_011374847.1    Uniprot ID   Q38WI3
Organism   Latilactobacillus sakei strain HUP1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1347175..1359052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS06540 (QBD03_06540) - 1347415..1348038 (+) 624 WP_016265269.1 helix-turn-helix transcriptional regulator -
  QBD03_RS06545 (QBD03_06545) - 1348058..1348855 (+) 798 WP_016265270.1 pyruvate, water dikinase regulatory protein -
  QBD03_RS06550 (QBD03_06550) - 1348977..1349222 (+) 246 WP_011374843.1 hypothetical protein -
  QBD03_RS06555 (QBD03_06555) - 1349273..1349917 (-) 645 WP_162100808.1 HD domain-containing protein -
  QBD03_RS06560 (QBD03_06560) manA 1349991..1350965 (-) 975 WP_280102580.1 mannose-6-phosphate isomerase, class I -
  QBD03_RS06565 (QBD03_06565) - 1351067..1352077 (-) 1011 WP_162100810.1 serine hydrolase domain-containing protein -
  QBD03_RS06570 (QBD03_06570) rcrQ 1352175..1354052 (-) 1878 WP_011374847.1 ABC transporter ATP-binding protein Regulator
  QBD03_RS06575 (QBD03_06575) rcrP 1354052..1355782 (-) 1731 WP_011374848.1 ABC transporter ATP-binding protein Regulator
  QBD03_RS06580 (QBD03_06580) - 1355806..1356447 (-) 642 WP_016265275.1 TetR family transcriptional regulator -
  QBD03_RS06585 (QBD03_06585) - 1356652..1357380 (+) 729 WP_011374850.1 ion transporter -
  QBD03_RS06590 (QBD03_06590) - 1357578..1357778 (-) 201 WP_004270328.1 cold-shock protein -
  QBD03_RS06595 (QBD03_06595) - 1357979..1358635 (+) 657 WP_280103369.1 type II CAAX endopeptidase family protein -
  QBD03_RS06600 (QBD03_06600) - 1358656..1358976 (+) 321 WP_112206153.1 hypothetical protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 69669.07 Da        Isoelectric Point: 5.2493

>NTDB_id=744644 QBD03_RS06570 WP_011374847.1 1352175..1354052(-) (rcrQ) [Latilactobacillus sakei strain HUP1]
MAEKAATNRPQGGHGPGRGMGGVVEKPKNFWGTTNRLLKYMSSRLIALVFVIVLAIVSVIFQIRTPKVLGEATTEIFKGV
MKGNAMQKAGIAMDRLPIDFDKIQHIIMTVILMYLASAVFSFLQQFIMTRISQQTVYELRKELKDKMQRVPINYYDTHSN
GDIMSRAINDMDNIASTLQQSLTQMVTSTVTFIGVLWMMLTISWQLTLIALVTIPLSLIVVGIVAPKSQKFFAAQQKSLG
LLNNQIEENFSGQVVLKTFNREQVTIDTFEEQNEKLYKAAWKAQFISGVIMPLMTFVNNLGYVFVAIIGGIRVSHGQVTL
GDMQAFMQYTQQFSQPISQLANLANTIQSTIASAERVFAVLDEEDMSEEPSTVPVVQDDANQLEMEHVEFGYQGKDLLLT
DYNLQVKPGQMIAIVGPTGAGKTTIINLLERFYDVSGGSIKLKGVDTRDMSREELRSHFAMVLQDTWLFTGTIWDNLKYG
NESASDEAILAAAKAAHVDGFVRQLPEGYNTVLNEEASNISQGQRQLLTIARAFVADPDILILDEATSSVDTRTEIHIQH
AMERLLQNRTSFVVAHRLSTIRDADNIIVMNHGSIMETGTHDELMVQDGFYADLYNSQFSGNVEI

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=744644 QBD03_RS06570 WP_011374847.1 1352175..1354052(-) (rcrQ) [Latilactobacillus sakei strain HUP1]
ATGGCAGAAAAAGCAGCAACAAACCGGCCACAAGGTGGTCACGGTCCAGGTCGCGGCATGGGTGGCGTCGTTGAGAAGCC
TAAGAATTTCTGGGGCACAACTAATCGTTTATTGAAATACATGTCGAGCCGTTTAATTGCCTTAGTATTTGTCATTGTTT
TGGCGATTGTCTCCGTTATTTTCCAAATTAGAACGCCCAAAGTTTTAGGGGAAGCAACAACTGAAATCTTTAAAGGGGTG
ATGAAAGGCAATGCCATGCAAAAAGCTGGGATTGCAATGGATCGCTTACCAATTGATTTCGATAAGATTCAACACATTAT
CATGACGGTGATCTTGATGTATCTTGCTTCAGCCGTCTTCAGTTTCTTACAACAATTTATTATGACGCGGATTTCACAAC
AAACCGTCTATGAATTGCGTAAGGAATTGAAAGATAAGATGCAACGAGTGCCAATCAATTATTACGATACCCATTCAAAC
GGGGATATCATGAGTCGTGCGATTAATGATATGGATAATATTGCCAGCACGCTACAACAAAGTTTAACGCAAATGGTGAC
CAGCACGGTAACGTTTATCGGTGTTTTATGGATGATGCTGACGATCAGTTGGCAATTAACGCTGATTGCTTTGGTCACAA
TTCCGTTGAGTTTAATTGTCGTTGGGATTGTCGCACCTAAGTCGCAAAAATTCTTTGCTGCACAACAAAAGAGTTTGGGC
TTATTAAATAATCAAATCGAAGAAAACTTTTCCGGTCAAGTGGTCTTGAAGACCTTTAACCGGGAACAAGTAACGATTGA
TACATTTGAAGAACAAAATGAAAAGTTGTATAAAGCTGCTTGGAAAGCCCAATTTATCTCTGGGGTGATCATGCCATTGA
TGACTTTCGTCAATAACTTAGGCTACGTCTTCGTTGCGATTATCGGTGGGATTCGCGTCTCACACGGTCAAGTCACATTA
GGGGACATGCAGGCCTTCATGCAATATACACAACAATTCTCACAACCAATTTCACAATTGGCTAACTTGGCAAACACAAT
TCAATCAACGATTGCTTCAGCTGAACGGGTTTTTGCTGTTTTAGATGAAGAAGATATGTCTGAAGAACCTTCAACTGTCC
CAGTTGTGCAAGATGATGCCAACCAATTAGAAATGGAACATGTTGAATTTGGTTACCAAGGCAAGGATCTCTTGTTGACG
GACTATAATTTACAAGTTAAACCAGGCCAAATGATTGCGATTGTTGGTCCTACTGGGGCTGGTAAGACAACTATTATTAA
TTTACTTGAACGTTTCTACGATGTTAGTGGCGGTTCGATTAAATTAAAAGGTGTCGATACACGTGATATGAGTCGGGAAG
AATTGCGGAGTCATTTTGCGATGGTTCTTCAAGATACTTGGCTATTTACCGGGACAATTTGGGATAACTTGAAATACGGT
AATGAATCAGCTTCAGACGAAGCGATTTTGGCAGCTGCTAAAGCGGCCCATGTTGACGGCTTTGTTCGTCAATTACCTGA
AGGCTATAACACAGTCTTAAATGAAGAAGCTTCAAATATTTCACAAGGTCAACGGCAATTATTGACGATTGCTCGGGCCT
TTGTGGCCGATCCAGATATCTTAATCTTGGATGAAGCAACCAGTTCTGTTGATACGCGGACTGAAATTCATATCCAACAC
GCAATGGAACGTTTATTGCAAAATCGAACGAGTTTCGTTGTTGCCCATCGTTTATCAACGATTCGGGATGCGGATAATAT
CATTGTGATGAATCACGGTTCAATTATGGAAACCGGCACACATGATGAATTGATGGTTCAAGACGGCTTTTACGCTGATC
TATATAACAGCCAATTCTCAGGGAACGTCGAGATTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(399-548)

ABC transporter transmembrane region (ABC_membrane)

(49-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.464

92.48

0.411