Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QBD03_RS06270 Genome accession   NZ_CP122959
Coordinates   1295945..1297684 (-) Length   579 a.a.
NCBI ID   WP_280102559.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290945..1302684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS06250 (QBD03_06250) pdhA 1290967..1292076 (-) 1110 WP_016265227.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  QBD03_RS06255 (QBD03_06255) - 1292400..1293083 (-) 684 WP_280102556.1 hypothetical protein -
  QBD03_RS06260 (QBD03_06260) def 1293589..1294146 (+) 558 WP_280102557.1 peptide deformylase -
  QBD03_RS06265 (QBD03_06265) rcrQ 1294195..1295958 (-) 1764 WP_280102558.1 ABC transporter ATP-binding protein Regulator
  QBD03_RS06270 (QBD03_06270) rcrP 1295945..1297684 (-) 1740 WP_280102559.1 ABC transporter ATP-binding protein Regulator
  QBD03_RS06275 (QBD03_06275) - 1297712..1298197 (-) 486 WP_112206189.1 hypothetical protein -
  QBD03_RS06280 (QBD03_06280) - 1298394..1298606 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  QBD03_RS06285 (QBD03_06285) - 1298611..1300299 (+) 1689 WP_016265232.1 ribonuclease J -
  QBD03_RS06290 (QBD03_06290) - 1300432..1301397 (+) 966 WP_280102560.1 diacylglycerol kinase family lipid kinase -
  QBD03_RS06295 (QBD03_06295) thiW 1301449..1301958 (-) 510 WP_280102561.1 energy coupling factor transporter S component ThiW -
  QBD03_RS06300 (QBD03_06300) tenA 1301948..1302634 (-) 687 WP_280102562.1 thiaminase II -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64653.13 Da        Isoelectric Point: 9.1434

>NTDB_id=744642 QBD03_RS06270 WP_280102559.1 1295945..1297684(-) (rcrP) [Latilactobacillus sakei strain HUP1]
MKLMWRYTIRYKKLLFWNFICVFGFILIELGLPTLLGQIIDKGINRHTVGPVWQYGTLMVVISLIGLVGLIGLAYTGSRL
TTNLTRDIRNDIFKKTMQFSHHEYGEFGVSSLITRTTNDAFQVTQFMVQVLRTGFMTPMMIVASAFMIVRTSLSLSWIVF
AAIPILLVGVVIIGWLSEPMSAEQQKNLDAINLNLRENLTGIRVIRAFVREKFQSMRFRKVNEAYSQSSIKLFTLVALAQ
PGFSFIFNIVFVLIIWQGAVQINTGHLAVGTLIAFIEYIFHVLFSFMLFASVFMMYPRAAVSAERIEKVLNSPVDITDDD
QGIQTTTTQGELAFENVSFAYPGPTESPVIRDVSFKAHPGETVAFIGSTGSGKSTLIQLIPRFFDVTRGQVMIDGYDVRD
YQLKALRQKIGFIPQKAVLFTGTIADNLRYGNPEATDAELWDALTIAQSKTFVAEKPDGLQTYLAEGGNNLSGGQKQRLA
IARAIVRRPDIYVFDDSFSALDYQTDAALRGALKSITKDATVLIVAQRVGTIMNADRIVVLNEGQVVGIGTHKELLKTNE
VYRAIAASQLSKEELNEEY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=744642 QBD03_RS06270 WP_280102559.1 1295945..1297684(-) (rcrP) [Latilactobacillus sakei strain HUP1]
ATGAAATTAATGTGGCGCTATACCATTCGCTATAAAAAACTGTTATTTTGGAATTTTATCTGCGTATTTGGGTTTATTTT
AATTGAACTGGGATTACCAACATTATTAGGACAAATTATCGATAAAGGTATCAACCGCCATACGGTCGGGCCGGTTTGGC
AATATGGGACTTTAATGGTCGTCATTTCCCTGATTGGCCTAGTGGGTTTAATCGGTTTAGCCTACACGGGGAGTCGCTTA
ACCACTAATTTAACGCGTGATATCCGGAACGATATCTTTAAAAAGACGATGCAATTTTCACATCATGAATATGGCGAGTT
TGGCGTGTCTTCCTTAATTACTCGGACGACCAACGATGCGTTTCAAGTGACGCAATTCATGGTGCAAGTGTTACGGACGG
GTTTTATGACCCCGATGATGATCGTTGCCAGTGCGTTCATGATTGTGCGGACGAGTCTGTCATTATCATGGATTGTTTTT
GCAGCCATTCCGATTTTATTAGTTGGGGTGGTTATCATTGGCTGGTTATCCGAACCAATGTCTGCAGAACAACAAAAAAA
CTTAGATGCAATCAATTTAAATTTACGTGAAAACTTAACTGGGATTCGGGTTATTCGCGCATTTGTGCGTGAAAAATTCC
AGAGTATGCGTTTTAGAAAAGTTAATGAAGCCTACAGTCAGAGTTCAATCAAACTCTTTACATTAGTAGCACTCGCACAA
CCTGGCTTTTCATTTATCTTCAATATTGTGTTCGTGTTAATCATTTGGCAAGGGGCGGTTCAAATTAACACGGGTCACTT
GGCAGTGGGGACGTTAATCGCCTTTATTGAATACATCTTCCACGTACTATTTTCATTCATGCTCTTTGCGAGTGTCTTCA
TGATGTATCCTAGAGCGGCTGTTTCAGCAGAACGGATTGAAAAAGTCCTTAATTCACCCGTAGATATTACGGATGATGAT
CAGGGGATTCAAACCACGACTACCCAAGGCGAATTGGCTTTTGAAAATGTCTCTTTTGCCTATCCTGGTCCGACTGAAAG
TCCGGTCATTCGGGATGTCAGTTTTAAAGCCCATCCTGGTGAAACTGTCGCCTTCATCGGTAGTACGGGGAGTGGTAAAT
CAACCTTAATTCAATTGATTCCGCGCTTTTTTGATGTGACGCGGGGGCAAGTCATGATTGATGGTTATGATGTTCGTGAT
TACCAATTGAAAGCATTACGCCAAAAAATTGGTTTTATTCCCCAAAAGGCGGTCCTCTTTACCGGCACGATTGCGGATAA
CTTGCGCTATGGTAATCCGGAAGCGACGGATGCTGAGTTATGGGATGCTTTAACGATTGCCCAATCCAAAACGTTTGTGG
CGGAAAAGCCAGACGGTCTCCAAACTTATTTGGCTGAAGGTGGTAACAACTTATCAGGTGGTCAAAAGCAACGACTAGCG
ATTGCCAGAGCAATTGTTCGTCGCCCAGACATCTACGTCTTTGACGATAGCTTTTCAGCCTTGGATTACCAAACAGACGC
AGCATTGCGAGGGGCTTTAAAATCAATTACTAAGGATGCGACGGTCTTAATTGTCGCCCAACGTGTGGGGACGATTATGA
ATGCGGATCGGATTGTCGTCTTAAATGAAGGCCAAGTTGTGGGCATCGGTACCCACAAAGAATTACTTAAAACAAATGAG
GTTTACCGGGCCATTGCCGCCTCACAGTTGTCAAAGGAGGAGCTCAATGAAGAATATTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-283)

ABC transporter (ABC_tran)

(351-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.646

100

0.413