Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QBD03_RS06265 Genome accession   NZ_CP122959
Coordinates   1294195..1295958 (-) Length   587 a.a.
NCBI ID   WP_280102558.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1289195..1300958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS06245 (QBD03_06245) - 1289988..1290965 (-) 978 WP_016265226.1 alpha-ketoacid dehydrogenase subunit beta -
  QBD03_RS06250 (QBD03_06250) pdhA 1290967..1292076 (-) 1110 WP_016265227.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  QBD03_RS06255 (QBD03_06255) - 1292400..1293083 (-) 684 WP_280102556.1 hypothetical protein -
  QBD03_RS06260 (QBD03_06260) def 1293589..1294146 (+) 558 WP_280102557.1 peptide deformylase -
  QBD03_RS06265 (QBD03_06265) rcrQ 1294195..1295958 (-) 1764 WP_280102558.1 ABC transporter ATP-binding protein Regulator
  QBD03_RS06270 (QBD03_06270) rcrP 1295945..1297684 (-) 1740 WP_280102559.1 ABC transporter ATP-binding protein Regulator
  QBD03_RS06275 (QBD03_06275) - 1297712..1298197 (-) 486 WP_112206189.1 hypothetical protein -
  QBD03_RS06280 (QBD03_06280) - 1298394..1298606 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  QBD03_RS06285 (QBD03_06285) - 1298611..1300299 (+) 1689 WP_016265232.1 ribonuclease J -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65142.65 Da        Isoelectric Point: 6.0639

>NTDB_id=744641 QBD03_RS06265 WP_280102558.1 1294195..1295958(-) (rcrQ) [Latilactobacillus sakei strain HUP1]
MKNIRVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVVMM
LTINLWMALLSLIMIPASLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSILKLYGQEDRAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPDDVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMAIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAETKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=744641 QBD03_RS06265 WP_280102558.1 1294195..1295958(-) (rcrQ) [Latilactobacillus sakei strain HUP1]
ATGAAGAATATTAGGGTGCTCAAACGCCTGATGCGCTATATTGGGCCTTATAAAATAACGTTCTGGTCAGCAATTACCGC
AACGGTGATTTCCGTTTTAGCGAATGCACTGTGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CCCAACACGTCGCCGTTAACTTTAGCTACATTACTAAAGTCATCGCGATGATTCTCAGTTTTGCATTACTTTATCAAACG
ATGATGTTTTTAGGGTCATTTTTAATGACGCGTGCGGTGCAGCACGCAATGCGCGATTTACGGCGGGATATCAATTTGCA
GATGAACGCATTGCCAGTCCGTTTCTTCGATTCACAACAACAAGGTAATATCTTGTCGCGTGTTACCAATGATGTCGATG
CAATCACGAATGCCTTGCAACAGAGTTTAATCCAAGTTGTGACTTCAATTTTGGGGATCATCATGGCGGTTGTCATGATG
TTGACGATTAATTTATGGATGGCTTTACTATCTTTAATTATGATTCCAGCCTCACTTTTGATTTCCAAAGCAATCATCAA
AAAGTCACAAGTTTACTTCCAAGGACAACAAAACACCTTGGGTGAAATGAACGGTTATGTTCAGGAAAATTATGGTGGCT
TCAGTATCTTGAAGTTGTATGGTCAAGAAGACAGAGCGGTTGATGAATTTGCAGCGATTACCGATCGATTGACTGAATTC
GGCTTCAAAGCGGCCTTTATTTCAGGAATCATGATGCCGTTAGTGGGTTTAACGACTAATCTAACCTACGCTGGGATGGC
AACCTTGGGTGGTTACTACGTCTTGCACGGTGTCATTACGGTTGGTAATTTACAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCAATTTCGCAAATCACGCAGTTATCTGGTGTCATGCAAGCTGCTGCCGCTGCGACACAACGGGTTTTTGAA
ATCTTGGATGAACCTATTGAACCCACTGATCAAGAAACAGCTGAATTACCGGATGATGTCCAGGGAAAAGTTGAATTTAA
AGATGTCAGCTTTAGTTATGATCCAGCCAAACCGTTGATTCGGGATCTAAGTTTCACCGCCAATCCGGGCGATAAAATTG
CGATTGTTGGGCCAACCGGTGCCGGGAAGACGACCATGATTAATTTATTGATGCGTTTTTACGATGTCAGTTCTGGTCAA
ATCCTAATTGATGGCGTCGATACGCGCCAGTTGAGTAAACAAACAGTTCGCTCACTCTTTGGGATGGTTCTTCAGGATGC
TTGGTTGTATCACACAACGATTACGGAAAATATTCGCTTTGGGAAGCTAGATGCTACCGAATATGAAGTCGTGGATGCTG
CCAAAACGGCCAATGTTGATCACTTCATTCATACGTTGCCAAATGGTTATCAGATGGCAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGGCAAAAGCAACTCCTAACAATTGCCCGGGCGGTCATTGCTAACCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCGGTCGATACGCGATTAGAAAGCTTATTGCAAAAGGCGATGGAAAAAGTGATGCAGGGTCGAACCAGTTTTG
TGATCGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTAATGGATCACGGTCAAATTGTTGAAAAGGGA
ACACATGACGACTTATTAGCTGCTAATGGTGTTTACGCTAAGCTTTATAACAGTCAATTTGCAGAAACAAAATTAAATGC
ATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(361-509)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.735

99.659

0.426