Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   K6J86_RS05705 Genome accession   NZ_AP024627
Coordinates   1117692..1121084 (+) Length   1130 a.a.
NCBI ID   WP_014479391.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1112692..1126084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J86_RS05695 (BsBEST3136_10670) addA 1112750..1116448 (+) 3699 WP_014479389.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  K6J86_RS05700 (BsBEST3136_10680) sbcD 1116520..1117695 (+) 1176 WP_014479390.1 exonuclease subunit SbcD -
  K6J86_RS05705 (BsBEST3136_10690) sbcC 1117692..1121084 (+) 3393 WP_014479391.1 exonuclease subunit SbcC Machinery gene
  K6J86_RS05710 (BsBEST3136_10700) hlpB 1121098..1121400 (+) 303 WP_003233097.1 HNH nuclease-like protein HlpB -
  K6J86_RS05715 (BsBEST3136_10710) gerPF 1121437..1121655 (-) 219 WP_003233096.1 spore germination protein -
  K6J86_RS05720 (BsBEST3136_10720) gerPE 1121687..1122088 (-) 402 WP_032725362.1 spore germination protein GerPE -
  K6J86_RS05725 (BsBEST3136_10730) gerPD 1122088..1122264 (-) 177 WP_014479392.1 spore germination protein GerPD -
  K6J86_RS05730 (BsBEST3136_10740) gerPC 1122261..1122878 (-) 618 WP_014479393.1 spore germination protein GerPC -
  K6J86_RS05735 (BsBEST3136_10750) gerPB 1122902..1123135 (-) 234 WP_003233090.1 spore germination protein GerPB -
  K6J86_RS05740 (BsBEST3136_10760) gerPA 1123150..1123371 (-) 222 WP_014479394.1 spore germination protein -
  K6J86_RS05745 (BsBEST3136_10770) yisI 1123794..1123964 (-) 171 WP_003233086.1 aspartyl-phosphate phosphatase YisI -
  K6J86_RS05750 yisJ 1124110..1125033 (-) 924 WP_014479396.1 CotH kinase family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128857.30 Da        Isoelectric Point: 5.2473

>NTDB_id=74464 K6J86_RS05705 WP_014479391.1 1117692..1121084(+) (sbcC) [Bacillus subtilis strain BEST3136]
MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNQAEDTLSVSFTF
ALQTNHQISYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKALEQAEARLEAMRKNRDQAK
ERFTEHQEIWNVQKEKSAYEEEEKRLAEEQSHIDSMQKRLLEAETAAALKPYADRYAEAIQHEEQAEKEQTLAQKDLADR
TAFFQQKHEEYEAWRQHKSEKEPELLTEQEQLSRLQEIEIKLSEAKQEEERKKADLRQKEEALQSVMNELETVTDRLTRG
QNRQTELKQQLKSLQVTSNERKSCHQAAEMALRIRQTEEQIKKEKKRSEELNLVLQKMNEEKNTLVQKTEAEENNIIQAY
EAVQTVYHLVCETERSLTRMTEETRKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSH
LEEDIKRTDVLLTEAAALSQEILSAKITLEEQSARFIEQCPFLQTIQAQNLEAAASFENQPVYEAFETVKFEWKRIKQDI
LSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIISELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDR
AAEECEKRIEKSIAFLAEHEAQKEKLRESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLRSVQQDLKL
LKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGID
QFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQT
HIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLT
SLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSG
RGTRVSLELM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=74464 K6J86_RS05705 WP_014479391.1 1117692..1121084(+) (sbcC) [Bacillus subtilis strain BEST3136]
ATGAAGCCGATCGCCTTAAGCATTAAGGGGCTCCACAGCTTTAGAGAGGAGCAGACGATAGATTTTGAAGGCCTTTCCGG
TGCTGGTGTTTTCGGCATTTTCGGCCCGACAGGAAGCGGTAAATCCTCTATTCTCGACGCAATGACGCTTGCTTTATACG
GAAAGGTGGAACGGGCGGCGAATAATACGCACGGTATCTTAAACCAGGCGGAAGATACGCTGTCTGTTTCCTTTACCTTT
GCGCTTCAGACGAATCACCAAATCTCATACAAAGTCGAGCGTGTGTTTAAGAGAACGGATGAAATGAAGGTAAAAACGGC
ACTTTGCCGCTTCATCGAAATCAAGGACGAGCATACGGTGCTGGCTGATAAAGCCAGCGAAGTGAATAAAAGAGTTGAGG
AGCTCTTAGGGCTGACGATCGACGATTTTACGAGAGCGGTGGTGCTGCCCCAAGGGAAATTTGCTGAATTTCTGTCTTTA
AAAGGGGCAGAGCGCAGGCATATGCTTCAGCGTTTATTTAATTTGGAGCAATATGGAGACAGGCTTGTGAAAAAGCTGAG
ACGGCAGGCGCAGGAAGCCAATGCGAGAAAAAATGAAATGCTTGCTGAACAGTCCGGTCTCGGTGAGGCGAGCTCAGAGG
CAGTGGAGCAGGCTGAAAAGGCTCTCGAACAAGCTGAAGCCCGGCTGGAAGCGATGAGGAAGAACCGTGATCAGGCGAAG
GAGCGGTTTACAGAGCATCAGGAGATATGGAATGTCCAAAAGGAAAAATCCGCTTATGAAGAAGAGGAAAAACGTCTCGC
AGAAGAACAGTCGCATATAGACAGCATGCAAAAACGCCTGCTGGAAGCAGAAACAGCAGCAGCCCTTAAGCCCTATGCGG
ACCGGTACGCAGAAGCGATCCAGCATGAGGAGCAAGCTGAAAAGGAACAAACGCTAGCCCAAAAGGATTTAGCAGACCGG
ACAGCTTTCTTTCAGCAAAAACATGAAGAGTATGAAGCGTGGCGCCAGCATAAAAGCGAGAAAGAGCCTGAGCTTTTAAC
AGAGCAGGAACAGCTTTCACGCTTGCAGGAAATCGAAATCAAACTGAGTGAGGCCAAGCAAGAGGAAGAGCGCAAAAAGG
CTGACCTTCGGCAGAAAGAAGAGGCTCTTCAATCTGTCATGAATGAATTGGAGACGGTAACAGACCGCCTGACACGAGGG
CAAAACAGACAGACAGAATTGAAACAGCAGCTCAAATCCCTGCAGGTGACATCCAATGAGCGAAAAAGCTGCCATCAGGC
TGCAGAAATGGCATTGCGCATCAGACAAACCGAGGAGCAAATCAAAAAAGAGAAAAAACGAAGTGAAGAATTGAACCTCG
TGCTGCAGAAGATGAATGAAGAGAAGAATACACTCGTTCAAAAGACGGAAGCGGAAGAAAACAACATCATTCAGGCATAT
GAGGCTGTACAAACTGTGTACCATTTGGTGTGCGAAACGGAACGCTCATTAACACGTATGACGGAAGAGACTAGAAAGAG
CCAACACACGCTTCACTTACAGCGTGAAAAAGCAAGGGTGGCACTGCTGACAAAAGAGTTAGCCCAAAAGCTGACTGCCG
GTAAGCCTTGCCCGGTATGCGGTTCAACCGATCATGATCCATCTGCCTCAGTACATGAAACATATGAAGCCGACAGCCAT
CTTGAAGAGGACATTAAACGGACAGATGTGTTATTGACGGAAGCTGCAGCTCTCAGCCAGGAGATTCTTTCAGCCAAAAT
TACGCTTGAAGAACAGTCCGCGCGCTTTATTGAACAGTGTCCGTTTTTGCAGACAATTCAAGCGCAGAACCTTGAAGCGG
CAGCTTCCTTCGAAAATCAGCCGGTGTATGAAGCATTTGAAACTGTCAAATTCGAATGGAAACGAATCAAGCAGGACATT
CTTTCTGTTAAGACACGAATGGCACAAATGATCGGCGCCTATCAGGAATCTTTAAAAAAGGCCGAGCAGCTTAATGAAAA
AATCGGTTTTGAAAAAAGAGAAGCTGACCGTATTGAAAGCATCATCAGCGAGCTTCAATCCTCAATGGACAGCAGTCTGA
ACATGTTTAAAGAAGCATTTCAGAATCAATCTGTGGACGAAGCAGAAAAATGGCAGCAAGCCATTGAAGAAAAGGACCGG
GCTGCAGAAGAATGTGAAAAACGAATTGAGAAGAGTATCGCGTTTCTTGCTGAGCATGAAGCACAAAAGGAAAAACTGCG
GGAATCGGGACACCGGCTTGAACGGGAAAAGCTGGAGCTTCATTATGCGGCTGAACGCATCAAGAGCGTGATAGCTGATT
ATGAGCACGAACTCGGAGATTATGCAAAAGGAGATTCGATTCAAATCAAACTCCGCTCTGTCCAGCAGGATCTAAAGCTG
TTAAAGGAAAAAGAACAATCTTTATATGAAGAACTGCAAAGCGCCCAAATGAAGCTCAACCAGGCGAAAAGCCGCGCTTC
GGCAAGCGAGCTCACTCTTCAAGAGGCGAAGGGCAGATTGGAAAAAGCAAAAGCTGCTTGGCTTGAGCATACAAAAAACA
CCTCCATTACCCGGACTGAGGAGGTTGAACAAAGTCTCATCCCAGCCGATGAACTTGAAAAGATGAAAACCGGCATAGAC
CAGTTTATGGATAAACTGAAGCAAAATGCTGCAAACTTAAAACGAGTAGCAGAGATACTTGCCGGCAGAGCATTATCAGA
GAGCGAATGGAACGAAACCGTTGCAGCATTACAAGAAGCTGAGGACGCATTTGGCGCTGCTATTGAGGAAAAAGGCGCGG
CAGCAAAAGCACTGGCTGTCATTCGCGACCATCATAAACGGTTTAATGAAATTGAAGCTGAACTGAAAAAATGGCAGACG
CATATCGACAGGCTGGACAAGCTGCAAGCTGTGTTTAAAGGCAATACCTTCGTCGAATTTTTAGCTGAGGAGCAGCTTGA
AAGCGTTGCGAGGGACGCTTCAGCAAGACTCAGTATGCTGACAAGACAGCGCTATGCCATCGAAGTAGACTCAGAAGGCG
GCTTCGTGATGCGGGATGACGCGAATGGAGGCGTACGACGCCCGGTTTCCAGTTTGTCTGGAGGAGAGACCTTCCTCACC
TCGCTTTCACTTGCTCTTGCGCTGTCTGCGCAGATTCAGCTTCGGGGGGAATACCCGCTGCAGTTCTTTTTCTTAGATGA
AGGCTTCGGCACACTGGATCAAGATCTGCTTGATACGGTTGTAACGGCCTTGGAAAAACTTCAGTCAGACAATCTGGCTG
TCGGTGTCATCAGCCATGTGCAGGAACTGCGTGCACGGCTTCCGAAAAAGCTGATCGTCCATCCGGCTGAACCGAGCGGC
CGCGGTACGCGGGTATCACTTGAGTTGATGTAA

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)

AAA domain (AAA_23)

(6-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

98.85

100

0.989

Multiple sequence alignment