Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   QBD03_RS05635 Genome accession   NZ_CP122959
Coordinates   1158643..1159701 (+) Length   352 a.a.
NCBI ID   WP_280102513.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153643..1164701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS05610 (QBD03_05610) - 1153864..1154502 (+) 639 WP_016265118.1 hemolysin III family protein -
  QBD03_RS05615 (QBD03_05615) - 1154531..1155373 (+) 843 WP_280102510.1 DegV family protein -
  QBD03_RS05620 (QBD03_05620) - 1155499..1156080 (+) 582 WP_280102511.1 TetR/AcrR family transcriptional regulator -
  QBD03_RS05625 (QBD03_05625) - 1156082..1157083 (+) 1002 WP_250824758.1 NADP-dependent oxidoreductase -
  QBD03_RS05630 (QBD03_05630) - 1157114..1157947 (+) 834 WP_280102512.1 alpha/beta hydrolase -
  QBD03_RS05635 (QBD03_05635) xerS 1158643..1159701 (+) 1059 WP_280102513.1 tyrosine recombinase XerS Machinery gene
  QBD03_RS05640 (QBD03_05640) thiT 1159915..1160517 (+) 603 WP_280102514.1 energy-coupled thiamine transporter ThiT -
  QBD03_RS05645 (QBD03_05645) - 1160555..1162348 (-) 1794 WP_280103364.1 heavy metal translocating P-type ATPase -
  QBD03_RS05650 (QBD03_05650) - 1162472..1163395 (-) 924 WP_016265125.1 manganese-dependent inorganic pyrophosphatase -
  QBD03_RS05655 (QBD03_05655) - 1163448..1164413 (-) 966 WP_016265126.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 40693.55 Da        Isoelectric Point: 9.1623

>NTDB_id=744630 QBD03_RS05635 WP_280102513.1 1158643..1159701(+) (xerS) [Latilactobacillus sakei strain HUP1]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVAVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKANNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFITFMQVDYPSALSNRQLASYTQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYSATNERALFVAKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=744630 QBD03_RS05635 WP_280102513.1 1158643..1159701(+) (xerS) [Latilactobacillus sakei strain HUP1]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAGCGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTGGCTGTTCAAACGACTAAGGATATCCCTCTTGTTGCACTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAAATCTTTTTAATGAATAAACGAAAAGCAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCCGATGGTGAGCCTTATTTCTACCGTAACGTCA
TGAAAAAAGTTAAACTACTCAAATCTTCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGT
GATAAAAAACATGACTTCATTACCTTTATGCAAGTCGACTATCCCAGTGCGCTCTCTAATCGCCAACTCGCTTCTTATAC
CCAAAATTGCGAACGGGATATTGCGATTTGCGTATTGGCACTTACTACCGGCATTCGCCTCTCAGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTCGAGCAGCTAACAATTACGGTTATTCGCAAAGGTGGTCAACAAGATACCGTGCCCATCGCA
CCTTGGGGTCTACCTTATCTGCAAGATTATGTTCAAATCCGACAACAGCGCTATTCAGCCACTAACGAACGGGCCTTATT
TGTCGCCAAATATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGCCTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATT
GTGGCGACCCAATTGGGCCAAACAACCACGCAAGCGACACATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCAGC
AATGGATAAGCTCGAGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

46.067

100

0.466