Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QBD03_RS03595 Genome accession   NZ_CP122959
Coordinates   743695..744423 (+) Length   242 a.a.
NCBI ID   WP_016264819.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 738695..749423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS03575 (QBD03_03575) - 740614..741582 (+) 969 WP_011374334.1 HD domain-containing protein -
  QBD03_RS03580 (QBD03_03580) - 741643..742551 (-) 909 WP_052006198.1 peptidylprolyl isomerase PrsA -
  QBD03_RS03585 (QBD03_03585) - 742717..743043 (-) 327 WP_025015896.1 YtxH domain-containing protein -
  QBD03_RS03590 (QBD03_03590) - 743046..743474 (-) 429 WP_035146545.1 HIT family protein -
  QBD03_RS03595 (QBD03_03595) pptA 743695..744423 (+) 729 WP_016264819.1 ABC transporter ATP-binding protein Regulator
  QBD03_RS03600 (QBD03_03600) - 744423..745625 (+) 1203 WP_082267623.1 ABC transporter permease -
  QBD03_RS03605 (QBD03_03605) - 745758..746552 (+) 795 WP_011374340.1 phosphotransferase family protein -
  QBD03_RS03610 (QBD03_03610) trmB 746757..747398 (+) 642 WP_016264821.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QBD03_RS03615 (QBD03_03615) - 747472..747798 (-) 327 WP_280103209.1 hypothetical protein -
  QBD03_RS03620 (QBD03_03620) - 747921..748241 (+) 321 WP_011374343.1 thioredoxin family protein -
  QBD03_RS03625 (QBD03_03625) ytpR 748260..748889 (+) 630 WP_035146548.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26944.22 Da        Isoelectric Point: 5.0678

>NTDB_id=744617 QBD03_RS03595 WP_016264819.1 743695..744423(+) (pptA) [Latilactobacillus sakei strain HUP1]
MSLEINQLTGGYAHVPVLQEVSFTVPNQQVVGLIGLNGAGKSTTIKHIIGLLTPQKGTITLNGVTLQSNPDQYRQSMAYV
PETPVLYPELTLREHLELTMMAYDLDFEKTWAKAMVLLKKFRLDNKLDWFPVHFSKGMRQKVMIVNAFMTDADLFIIDEP
FTGLDPLAIHDLLDIIADKKAAGAAILMSTHILATAQQYADSFVLLNQGKVRTTGTLEELKAEFNMADANLDDIYLQMTK
EG

Nucleotide


Download         Length: 729 bp        

>NTDB_id=744617 QBD03_RS03595 WP_016264819.1 743695..744423(+) (pptA) [Latilactobacillus sakei strain HUP1]
ATGAGTTTAGAAATTAACCAATTAACGGGTGGTTACGCCCACGTACCAGTGCTCCAAGAAGTAAGTTTTACGGTTCCCAA
TCAACAGGTTGTCGGCTTGATTGGCTTAAACGGGGCTGGTAAATCAACGACCATTAAACATATTATCGGATTATTAACAC
CGCAAAAGGGCACGATTACGCTTAATGGCGTCACGTTGCAATCTAATCCGGATCAATACCGCCAAAGCATGGCTTACGTG
CCGGAAACGCCAGTCCTTTATCCCGAGTTAACATTACGAGAACATCTGGAACTAACGATGATGGCTTACGATTTAGATTT
CGAGAAGACTTGGGCCAAAGCAATGGTGTTATTGAAGAAGTTCCGACTCGACAATAAGCTGGACTGGTTCCCAGTTCATT
TTTCAAAAGGGATGCGTCAAAAAGTGATGATCGTCAACGCTTTTATGACTGACGCCGATTTATTCATCATTGATGAACCT
TTTACAGGTCTTGATCCACTCGCCATTCACGATTTATTGGACATTATTGCTGATAAAAAGGCGGCGGGGGCGGCTATTTT
GATGTCGACCCATATTTTGGCCACGGCGCAACAATACGCCGATTCTTTTGTCCTATTGAATCAAGGCAAGGTCCGAACAA
CTGGGACGCTTGAAGAACTGAAAGCAGAATTTAACATGGCAGATGCAAACTTAGATGATATCTATTTGCAAATGACGAAA
GAAGGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(18-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

58.403

98.347

0.574
  pptA Streptococcus thermophilus LMD-9

57.143

98.347

0.562