Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   QBD03_RS01855 Genome accession   NZ_CP122959
Coordinates   415817..418114 (-) Length   765 a.a.
NCBI ID   WP_280103096.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 410817..423114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS01825 (QBD03_01825) - 411548..411901 (+) 354 WP_280103093.1 PqqD family protein -
  QBD03_RS01830 (QBD03_01830) - 411959..413380 (+) 1422 WP_280103094.1 C69 family dipeptidase -
  QBD03_RS01835 (QBD03_01835) - 413454..414305 (+) 852 WP_016264606.1 YitT family protein -
  QBD03_RS01840 (QBD03_01840) - 414355..414570 (-) 216 WP_016264607.1 DUF2187 family protein -
  QBD03_RS01845 (QBD03_01845) - 414767..415609 (+) 843 WP_280103095.1 HAD family hydrolase -
  QBD03_RS01855 (QBD03_01855) helD 415817..418114 (-) 2298 WP_280103096.1 RNA polymerase recycling motor HelD Machinery gene
  QBD03_RS01860 (QBD03_01860) trpS 418471..419487 (+) 1017 WP_025016433.1 tryptophan--tRNA ligase -
  QBD03_RS01865 (QBD03_01865) - 419641..421008 (+) 1368 WP_016264611.1 MATE family efflux transporter -
  QBD03_RS01870 (QBD03_01870) - 421001..421798 (+) 798 WP_280103097.1 DNA/RNA non-specific endonuclease -
  QBD03_RS01875 (QBD03_01875) - 421857..422498 (+) 642 WP_229295511.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 87049.32 Da        Isoelectric Point: 4.6334

>NTDB_id=744602 QBD03_RS01855 WP_280103096.1 415817..418114(-) (helD) [Latilactobacillus sakei strain HUP1]
MLQEETQQQEQARVDLTVDQVNQRLTVINQQLDNAYNETKDIEQRYGDTTKVNITEVDDRMETNAAVQQQKQLVAAAVEN
EKLLTTQQKRLTDLVDSPYFGRIDINEDGEEESLYIGTATFINEQDQFLVYDWRAPIASIYYNGTLGTVSYDTPNGPVKV
DLTLKRQFKIKNGQIEHLFDTNETVGDELLQAVLGQQSDEYMQNIVATIQKEQNDIIRDTTADLLIVQGVAGSGKTSAVL
QRIAFLLYHSRSNLEADQMVLFSPNRLFSHYISDVLPSLGEKNMRQVTMAEFLSHRFSGLQVETLFDRFEKDQASFPEMT
QAMRRFKESAPFMQQIAAYVKQVSTQPLAFNDLYFEDRPFFTKAQINKIYLDLPHNMRPGDKFIATKNTLIKRLKRQINL
EVHLDWVAEKIDTLSDDDYRAIVGDREFDSGDLEQAFIAREIVQNYFADLYDAIYNDYFLDVYTEYQNFLRTACPEKIPT
AVWAAMIETVAQNNERHLVGLSDAAPILYLRDLLTDSGQNHSIQYLFVDEMQDYSIAQFVYLQHAFPNAKFTILGDYAQD
VFTATYQVGNFIERLCAAFPKLKTNQISLTKSYRATAPITNFAKALLPKETALQAFSRDGRLPRVITATKAASLNALTQE
IFHLQKRHATIAILTKDQQTARQLFASLTPDDQVTLISETTRSLPKGVLVLPLYLAKGLEFDAVIGYDISATTFGQASDV
DLLYTLMTRAMHDLTLLGIDTLSPLIADLDHQYYQNVTTTKETIA

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=744602 QBD03_RS01855 WP_280103096.1 415817..418114(-) (helD) [Latilactobacillus sakei strain HUP1]
ATGCTACAAGAAGAAACGCAACAACAAGAACAAGCTCGTGTTGATTTAACGGTTGACCAAGTCAATCAACGGCTAACGGT
TATCAACCAACAATTGGACAACGCCTATAATGAAACTAAAGATATTGAGCAACGTTACGGTGATACTACCAAGGTTAACA
TTACGGAAGTCGATGACCGGATGGAAACCAATGCCGCTGTCCAACAGCAAAAGCAACTGGTCGCAGCTGCCGTTGAAAAC
GAGAAACTCCTAACGACACAACAAAAACGACTAACGGATTTAGTTGACTCCCCCTATTTTGGTCGGATTGATATCAATGA
AGACGGTGAAGAAGAATCACTCTACATCGGAACCGCCACTTTTATCAACGAACAAGACCAATTTTTAGTTTATGATTGGC
GAGCACCCATCGCTAGTATCTATTATAATGGCACACTGGGAACCGTCAGTTACGATACGCCCAACGGCCCCGTTAAAGTT
GACTTAACTTTAAAACGGCAGTTCAAGATTAAAAACGGTCAGATTGAACACCTCTTTGATACAAACGAAACGGTTGGCGA
CGAACTCCTGCAAGCCGTCCTCGGCCAACAAAGCGACGAATATATGCAAAATATTGTCGCAACAATTCAAAAAGAACAAA
ACGATATTATTCGTGATACGACTGCCGATTTACTAATCGTTCAAGGCGTCGCCGGTAGTGGTAAGACTTCTGCGGTTTTA
CAACGGATTGCCTTCTTACTCTATCACAGTCGTAGCAACTTAGAAGCCGACCAGATGGTTCTTTTTTCACCTAACCGCTT
GTTCAGCCATTACATCTCTGACGTTCTCCCCAGCTTAGGCGAGAAAAACATGCGCCAAGTGACCATGGCCGAGTTTTTAA
GCCACCGTTTCTCGGGACTTCAAGTTGAAACACTCTTCGACCGCTTTGAAAAAGATCAAGCAAGTTTCCCAGAAATGACC
CAAGCAATGCGTCGCTTTAAGGAAAGTGCGCCCTTTATGCAACAAATTGCGGCCTACGTTAAACAGGTTTCTACACAACC
GCTTGCCTTCAATGACCTCTACTTTGAAGATCGGCCTTTCTTTACAAAAGCGCAAATCAATAAAATCTATCTTGATCTCC
CACATAATATGCGTCCTGGTGATAAATTTATTGCTACTAAGAACACCTTAATTAAGCGGCTCAAACGCCAGATCAATTTA
GAAGTGCACCTTGATTGGGTCGCTGAAAAAATTGATACCTTATCCGATGATGACTACCGTGCCATTGTTGGTGATCGCGA
ATTTGATTCCGGCGATTTAGAGCAAGCTTTTATTGCCCGGGAAATTGTTCAAAATTATTTTGCTGATTTATACGATGCTA
TTTATAACGATTACTTCTTGGATGTGTATACTGAATATCAAAACTTCTTACGAACGGCTTGCCCTGAAAAGATACCGACC
GCCGTTTGGGCTGCAATGATTGAAACAGTTGCCCAAAATAATGAACGCCATCTCGTTGGTTTGAGCGACGCAGCCCCTAT
TTTATATCTTCGTGACTTATTAACCGATAGTGGTCAAAATCACAGTATTCAGTACTTATTCGTCGATGAGATGCAAGATT
ATAGCATTGCGCAATTTGTCTATCTCCAACATGCTTTTCCCAACGCTAAATTCACGATTCTTGGCGATTACGCACAAGAT
GTTTTTACCGCTACTTACCAAGTCGGTAATTTCATCGAGCGCCTCTGTGCGGCTTTTCCAAAACTAAAAACTAACCAAAT
CAGTTTGACGAAGAGTTATCGCGCGACTGCCCCAATCACGAATTTTGCAAAGGCCCTACTGCCTAAAGAAACAGCCTTGC
AGGCCTTTAGTCGTGACGGTCGGCTTCCCCGCGTTATCACGGCCACCAAAGCTGCTAGTTTAAATGCCTTGACGCAGGAA
ATTTTCCACCTGCAAAAGCGGCATGCAACCATCGCCATTTTAACCAAGGATCAACAAACAGCGCGCCAACTTTTCGCCAG
CCTCACCCCCGATGATCAGGTAACGCTCATCTCCGAGACCACCCGCTCATTGCCAAAAGGCGTCTTGGTATTACCGCTAT
ACCTCGCTAAAGGGCTCGAATTCGATGCCGTCATTGGCTACGATATTTCAGCAACAACCTTCGGCCAAGCAAGCGACGTT
GATTTACTCTATACATTGATGACGCGTGCAATGCATGACTTAACTTTGTTAGGGATTGACACCCTCAGCCCACTAATTGC
TGATTTAGATCATCAATACTATCAGAACGTTACAACAACCAAGGAAACGATTGCCTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(689-736)

AAA domain (AAA_19)

(213-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

36.352

100

0.367