Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QBD03_RS01645 Genome accession   NZ_CP122959
Coordinates   366498..368297 (-) Length   599 a.a.
NCBI ID   WP_280103357.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 361498..373297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS01620 (QBD03_01620) - 361749..363290 (+) 1542 WP_056936437.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  QBD03_RS01625 (QBD03_01625) - 363310..363936 (+) 627 WP_280103081.1 hypothetical protein -
  QBD03_RS01630 (QBD03_01630) - 364086..364973 (+) 888 WP_011373992.1 zinc ABC transporter substrate-binding protein -
  QBD03_RS01635 (QBD03_01635) - 364970..365650 (+) 681 WP_011373993.1 ATP-binding cassette domain-containing protein -
  QBD03_RS01640 (QBD03_01640) - 365685..366461 (+) 777 WP_011373994.1 metal ABC transporter permease -
  QBD03_RS01645 (QBD03_01645) pepF 366498..368297 (-) 1800 WP_280103357.1 oligoendopeptidase F Regulator
  QBD03_RS01650 (QBD03_01650) - 368497..369684 (+) 1188 WP_011373996.1 LCP family protein -
  QBD03_RS01655 (QBD03_01655) - 369829..371064 (+) 1236 WP_011373997.1 nucleoside transporter C-terminal domain-containing protein -
  QBD03_RS01665 (QBD03_01665) - 371370..372101 (+) 732 WP_011373998.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67572.38 Da        Isoelectric Point: 4.4972

>NTDB_id=744601 QBD03_RS01645 WP_280103357.1 366498..368297(-) (pepF) [Latilactobacillus sakei strain HUP1]
MHKLPTRSEVPENLTWDLSTIFKNDSDFEAAVAALKQALPALEQYNQPFKTADQLVTTIEQVLTLFRQLETVYVYASMKN
DQDTTNTTYQGYQAQVDALAADVSAAAAFLEPAILEIPVDQLTDWQTNELALKSYQHFIQTITDSREHVLSGQEEALIAA
AGDIFGAASQTFSVLDNSDIQFPDVVDETGQTHQLSNGLYSQLLQSTDRQVRQDVFEALYSTYDQFKNTFATTLATEIKG
HNYLAQVHHYDSARQAALAPKAIPESVYTTLVDQVNQHLPLLHRYVKLRQKQLALPQLHMYDLYTPLLGKPALSYTYPQA
QATAREALAVLGPEYTPIVDQIFDQRQIDVVENKGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSYLTR
HNQPYVYGDYPIFVAEIASTTNENLLTEYLLKTQKDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHYIHDAAANGTPLTA
DFMSTYYADLNARYYGDAVAKDPQIALEWARIPHFYMNYYVYQYATGFAAATTLADQISTNQPGALGNYLTYLKNGSASY
PIETMQKAGVDMTNADYLERAFDVFEQRLDQLEALLADM

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=744601 QBD03_RS01645 WP_280103357.1 366498..368297(-) (pepF) [Latilactobacillus sakei strain HUP1]
ATTCACAAATTACCCACACGATCCGAAGTCCCTGAAAACTTAACCTGGGACCTCAGTACCATTTTCAAAAATGACTCAGA
TTTTGAGGCAGCTGTTGCGGCATTGAAACAAGCACTACCAGCACTTGAACAATATAACCAACCGTTTAAAACGGCTGATC
AACTCGTAACAACGATTGAACAAGTACTAACGCTCTTTAGACAATTAGAAACGGTCTATGTTTACGCTAGCATGAAAAAC
GATCAGGATACAACTAATACCACTTATCAAGGTTATCAAGCTCAGGTCGATGCTTTAGCAGCTGACGTTTCAGCGGCGGC
CGCCTTTTTAGAACCCGCTATCCTCGAAATTCCCGTTGATCAATTAACTGACTGGCAGACCAATGAGCTAGCACTTAAAA
GTTATCAACATTTTATCCAGACTATCACTGATAGCCGCGAACATGTCTTATCAGGTCAAGAAGAAGCCCTAATTGCCGCT
GCTGGCGATATCTTTGGTGCTGCTAGTCAAACCTTTAGTGTTTTGGATAACTCAGATATTCAATTCCCAGACGTTGTCGA
TGAAACCGGCCAAACGCATCAATTATCAAACGGCCTCTATAGCCAATTGTTACAATCAACCGATCGCCAGGTCCGCCAAG
ACGTCTTTGAAGCACTCTATAGTACTTACGATCAATTCAAAAATACGTTTGCGACAACCCTTGCGACTGAAATCAAAGGG
CACAACTACCTCGCTCAAGTCCATCACTACGACAGTGCGCGCCAAGCAGCCCTCGCGCCTAAGGCTATTCCCGAATCAGT
CTACACAACCTTAGTCGACCAAGTGAACCAACATCTACCATTATTACATCGTTATGTTAAATTACGCCAAAAGCAATTAG
CATTACCGCAATTGCATATGTACGACTTATACACACCTCTTTTGGGCAAACCCGCTTTAAGCTACACTTATCCACAAGCG
CAAGCAACAGCGCGCGAAGCATTAGCCGTCTTAGGGCCTGAATATACCCCAATTGTGGACCAAATCTTCGATCAACGACA
AATTGATGTCGTTGAAAACAAAGGAAAGCGCAGTGGCGCTTACTCTGGTGGCGCTTATGATACCAATCCGTTCATTCTCT
TGAATTGGCAAGACGATCTTAACAACTTATACACACTGGTCCACGAAACCGGCCACAGTGTCCACAGTTATTTAACACGT
CACAATCAACCTTACGTTTATGGTGATTATCCAATCTTCGTCGCTGAAATTGCGTCCACAACGAATGAAAATCTGCTTAC
TGAATATCTTTTGAAGACCCAAAAAGATCCCAAAGTTCAAGCCTACTTGTTGAACTACTACCTTGATGGTTTCAAAGGGA
CTGTCTTCCGTCAAACACAATTTGCCGAATTCGAACACTATATTCACGATGCAGCAGCCAACGGAACCCCTCTAACAGCT
GACTTCATGTCAACTTACTACGCTGACTTAAACGCTCGCTATTATGGTGATGCCGTTGCCAAGGATCCTCAAATCGCCTT
AGAATGGGCTCGGATTCCCCATTTTTACATGAACTATTACGTTTATCAATATGCAACTGGCTTTGCCGCTGCGACGACGC
TCGCTGATCAAATCAGTACGAACCAACCGGGTGCACTCGGCAACTATCTGACCTACCTCAAAAACGGGAGTGCCAGTTAC
CCAATTGAAACAATGCAAAAAGCCGGTGTGGATATGACTAACGCCGATTATCTTGAACGCGCCTTTGATGTTTTTGAACA
ACGCCTCGATCAATTAGAAGCATTACTTGCTGATATGTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.992

98.664

0.543