Detailed information NTG0744598

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: QBD03_RS01145
• Genome accession: NZ_CP122959
• Coordinates: 239847..241970 (+)
• Length: 707 a.a.
• NCBI ID: WP_280103014.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain HUP1
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 234847..246970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBD03_RS01130 (QBD03_01130)	-	236838..237170 (-)	333	WP_341870795.1	metalloregulator ArsR/SmtB family transcription factor	-
QBD03_RS01135 (QBD03_01135)	-	237256..237864 (+)	609	WP_280103012.1	cadmium resistance transporter	-
QBD03_RS01140 (QBD03_01140)	-	237986..239569 (+)	1584	WP_280103013.1	cation:proton antiporter	-
QBD03_RS01145 (QBD03_01145)	clpE	239847..241970 (+)	2124	WP_280103014.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
QBD03_RS01150 (QBD03_01150)	-	242011..242541 (+)	531	WP_280103015.1	DUF308 domain-containing protein	-
QBD03_RS01155 (QBD03_01155)	-	242810..243691 (-)	882	WP_280103016.1	AraC family transcriptional regulator	-
QBD03_RS01160 (QBD03_01160)	-	243855..245138 (+)	1284	WP_280103017.1	MFS transporter	-
QBD03_RS01165 (QBD03_01165)	-	245161..246249 (+)	1089	WP_280103018.1	alcohol dehydrogenase catalytic domain-containing protein	-
QBD03_RS01170 (QBD03_01170)	-	246251..246715 (+)	465	WP_280103019.1	HIT family protein	-

Sequence

Protein

• Length: 707 a.a.
• Molecular weight: 78155.59 Da
• Isoelectric Point: 4.7615

>NTDB_id=744598 QBD03_RS01145 WP_280103014.1 239847..241970(+) (clpE) [Latilactobacillus sakei strain HUP1]
MANMYGNDPFFNNDMDDIFNQVFRRMGNSESARYVINGRELSPDEFAQYRATGKLPNREKEIEIKQNGEHALKKGGILEK
LGRNLTQEARDGLLDPVIGRYNEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQEIIAGKVPEAIKDKEIYSIDLS
SLEAGTQYRGSFEENIKNLIKEVKAAGNVILFFDEIHQILGIGSTGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNDVLVNEPSAADTVKILQGIKGLYEKHHHIELPDDVLKAAVDYSVQYIPQRTLPDKAIDLLDMTAAHL
AAKRPETDKAKLAAELKQLEADKAAAVEAENYQAAEDLKVKIEKIKAQLATDDQHAAEVIATVDDIAQSVERLTGIPVAK
MGSNDIQRLKNLGQRLKDKVIGQDEAVEMVARAIRRNRAGFSEGNQPIGSFLFVGPTGVGKTELAKQLALDMFGNKEAII
RLDMSEYADRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLFDEIEKADPQVLTLLLQVMDDGRLTDGQGNVIDF
KNTVIIATSNAGFGNEKLTMNDQEDAKLLDKLAPYFRPEFLNRFNGIVEFTHLTKADLSQIVDLMLTNVEQTLAKKDITL
VVSKEAKDWLMEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDHADVKDLKADLVDDQIVIQAVDSGN

Nucleotide

• Length: 2124 bp

>NTDB_id=744598 QBD03_RS01145 WP_280103014.1 239847..241970(+) (clpE) [Latilactobacillus sakei strain HUP1]
ATGGCAAATATGTACGGAAATGATCCTTTTTTTAATAATGATATGGATGATATCTTCAATCAAGTTTTCAGAAGAATGGG
TAATTCAGAGTCAGCGCGATATGTGATTAACGGACGAGAATTATCACCGGATGAGTTTGCTCAGTATCGGGCAACTGGTA
AATTACCTAATCGAGAAAAAGAAATTGAAATTAAGCAAAATGGTGAACACGCCCTTAAAAAAGGTGGCATTCTTGAAAAA
TTAGGTCGAAACTTAACCCAAGAAGCAAGGGATGGTTTATTAGATCCTGTGATTGGCCGGTATAATGAAATTCAAGAAAC
AGCTGAAATATTGAGTCGCCGGACTAAAAATAATCCAATTCTAGTTGGGGATGCAGGTGTTGGTAAAACCGCAGTTGTTG
AAGGATTGGCCCAAGAAATTATTGCTGGAAAAGTGCCGGAAGCCATTAAAGATAAAGAAATCTATTCAATCGATTTGTCC
TCACTAGAAGCTGGTACGCAATATCGTGGTTCATTTGAAGAAAATATTAAAAATTTAATTAAAGAAGTAAAAGCAGCTGG
CAATGTCATTCTCTTTTTTGACGAAATTCATCAAATTTTAGGGATTGGTTCAACCGGTGGCGAAGATGGTGGCAAAGGGT
TAGCCGATATTATCAAGCCAGCTTTATCACGTGGTGAATTGACGGTCATCGGTGCGACAACCCAAGATGAATATCGCAAC
ACTATTTTGAAAAATGCCGCATTAGCAAGACGATTTAACGATGTCTTGGTCAATGAACCTAGCGCAGCAGATACGGTTAA
AATCTTACAGGGAATTAAAGGCTTGTATGAAAAGCACCATCATATTGAACTACCAGATGACGTTTTGAAAGCGGCTGTTG
ACTATTCTGTTCAATATATTCCACAACGGACGTTGCCTGACAAGGCAATCGATTTATTAGATATGACTGCAGCTCATTTA
GCAGCTAAACGCCCAGAAACAGATAAAGCTAAATTGGCGGCTGAACTTAAACAATTAGAAGCTGATAAAGCCGCAGCTGT
CGAAGCTGAAAATTATCAAGCTGCTGAAGATCTAAAAGTTAAAATTGAGAAAATTAAAGCGCAATTGGCAACCGATGATC
AGCATGCGGCAGAAGTGATTGCGACTGTTGATGATATTGCGCAATCTGTTGAAAGATTAACCGGCATCCCGGTTGCCAAA
ATGGGGAGCAATGATATTCAACGCTTGAAGAACTTGGGCCAACGCTTAAAAGATAAGGTCATTGGTCAAGATGAAGCTGT
TGAAATGGTAGCGCGGGCTATTCGCAGAAATCGAGCAGGTTTTTCGGAAGGTAATCAACCAATTGGGAGCTTCTTATTTG
TTGGTCCAACTGGGGTTGGGAAAACTGAATTAGCAAAACAATTAGCCTTAGATATGTTTGGTAACAAAGAAGCGATTATC
CGTTTGGATATGAGTGAATATGCTGACCGGACAGCTGTTTCTAAATTGATTGGGACGACAGCTGGCTATGTTGGGTATGA
CGATAACTCTAATACTTTAACCGAACGCGTTCGTCGTAATCCATATTCAATTGTCTTGTTCGATGAAATTGAAAAAGCTG
ATCCACAAGTTTTAACGTTATTACTACAAGTGATGGACGATGGTCGTTTAACGGATGGTCAAGGGAACGTAATCGACTTT
AAGAACACGGTGATTATTGCGACATCTAATGCCGGTTTTGGCAATGAAAAATTAACCATGAACGACCAAGAAGATGCTAA
ATTATTAGATAAGTTAGCACCATATTTCAGACCAGAATTCTTAAATCGTTTTAACGGGATTGTTGAATTTACGCATTTAA
CGAAAGCTGACTTGTCACAAATTGTCGATTTAATGTTAACCAATGTTGAACAAACATTAGCCAAAAAAGATATTACTTTA
GTTGTTTCAAAAGAAGCAAAGGATTGGTTGATGGAAGAAGGCTATGATGAAGCAATGGGAGCACGTCCATTGAGACGGGT
TATTGAACAACAAATCCGAGATAAAGTGACTGATTTTTATCTCGATCATGCGGATGTCAAAGACTTAAAGGCCGATTTAG
TTGATGATCAAATAGTCATTCAGGCAGTTGACTCTGGAAACTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (613-683)

• AAA domain (Cdc48 subfamily) (AAA_2) (446-605)

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• AAA lid domain (AAA_lid_9) (262-359)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	49.922	90.099	0.45
clpC	Lactococcus lactis subsp. cremoris KW2	49.131	89.533	0.44
clpE	Streptococcus pneumoniae TIGR4	47.596	88.26	0.42
clpC	Streptococcus pneumoniae Rx1	43.917	95.332	0.419
clpC	Streptococcus pneumoniae D39	43.917	95.332	0.419
clpE	Streptococcus pneumoniae D39	47.504	87.836	0.417
clpE	Streptococcus pneumoniae Rx1	47.504	87.836	0.417
clpE	Streptococcus pneumoniae R6	47.504	87.836	0.417
clpC	Streptococcus pneumoniae TIGR4	44.444	91.655	0.407
clpC	Bacillus subtilis subsp. subtilis str. 168	45.367	88.543	0.402
clpC	Streptococcus thermophilus LMD-9	44.911	87.553	0.393
clpC	Streptococcus thermophilus LMG 18311	44.426	87.553	0.389
clpC	Streptococcus mutans UA159	44.175	87.412	0.386
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.546	87.836	0.365