Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB4   Type   Machinery gene
Locus tag   QAD58_RS06725 Genome accession   NZ_CP122956
Coordinates   1392904..1393329 (-) Length   141 a.a.
NCBI ID   WP_286448259.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387904..1398329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD58_RS06690 (QAD58_06695) infC 1388471..1389082 (+) 612 WP_000089218.1 translation initiation factor IF-3 -
  QAD58_RS06695 (QAD58_06700) rpmI 1389063..1389257 (+) 195 WP_001125542.1 50S ribosomal protein L35 -
  QAD58_RS06700 (QAD58_06705) rplT 1389352..1389702 (+) 351 WP_286448257.1 50S ribosomal protein L20 -
  QAD58_RS06705 (QAD58_06710) - 1389902..1390762 (+) 861 WP_000750190.1 outer membrane protein -
  QAD58_RS06710 (QAD58_06715) - 1391117..1391305 (+) 189 Protein_1311 DUF1104 domain-containing protein -
  QAD58_RS07805 - 1391268..1392901 (-) 1634 Protein_1312 type IA DNA topoisomerase -
  QAD58_RS06725 (QAD58_06730) comB4 1392904..1393329 (-) 426 WP_286448259.1 type IV secretory system conjugative DNA transfer family protein Machinery gene
  QAD58_RS06730 (QAD58_06735) comB4 1393323..1394210 (-) 888 WP_350318910.1 DUF87 domain-containing protein Machinery gene
  QAD58_RS06735 (QAD58_06740) - 1394217..1395333 (-) 1117 Protein_1315 hypothetical protein -
  QAD58_RS06740 (QAD58_06745) comB3 1395326..1395592 (-) 267 WP_128039100.1 virB3 type IV secretion protein Machinery gene
  QAD58_RS06745 (QAD58_06750) - 1395593..1395895 (-) 303 WP_350318897.1 virB2 type IV secretion protein -
  QAD58_RS06750 (QAD58_06755) - 1395892..1397414 (-) 1523 Protein_1318 hypothetical protein -
  QAD58_RS06755 (QAD58_06760) - 1397421..1397714 (-) 294 WP_286448263.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15856.34 Da        Isoelectric Point: 9.7774

>NTDB_id=744579 QAD58_RS06725 WP_286448259.1 1392904..1393329(-) (comB4) [Helicobacter pylori strain BT112]
MLAKIKDTLAQARKLNGVLTLAFQDINQLDGVEGAKSIIENAAQVILYPTNNFEKLESYGILLSPIEKSFLNKTPLNARQ
VLVKNLLTQSSVFLEINLEKLNSTSKKFLRAYSSSASSVFELETLKKDNPKNYKEIYLTKE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=744579 QAD58_RS06725 WP_286448259.1 1392904..1393329(-) (comB4) [Helicobacter pylori strain BT112]
ATGTTAGCTAAAATCAAAGACACACTCGCTCAAGCTAGAAAACTCAATGGGGTTTTAACTTTAGCCTTTCAAGACATTAA
CCAACTTGATGGTGTAGAGGGAGCAAAGTCCATTATAGAAAACGCCGCTCAAGTCATACTCTATCCTACAAACAATTTTG
AGAAATTAGAGAGCTATGGCATTTTATTAAGTCCTATTGAAAAATCATTTTTAAACAAAACGCCGTTAAACGCTAGGCAA
GTATTAGTGAAAAACCTTCTCACTCAATCTAGCGTATTTTTAGAAATCAATTTAGAAAAGCTAAACAGCACCAGTAAAAA
ATTTTTAAGAGCGTATAGCTCTAGTGCGTCTAGCGTTTTTGAACTAGAAACGCTTAAAAAGGATAATCCAAAGAATTATA
AAGAAATTTACTTGACAAAGGAGTAG

Domains

Predicted by InterProScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(2-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB4 Helicobacter pylori 26695

44.361

94.326

0.418