Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QAD58_RS01540 Genome accession   NZ_CP122956
Coordinates   299386..300435 (-) Length   349 a.a.
NCBI ID   WP_286448545.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT112     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 294386..305435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD58_RS01520 (QAD58_01525) rpsL 295300..295707 (+) 408 WP_001142322.1 30S ribosomal protein S12 -
  QAD58_RS01525 (QAD58_01530) rpsG 295723..296190 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  QAD58_RS01530 (QAD58_01535) fusA 296202..298280 (+) 2079 WP_000101828.1 elongation factor G -
  QAD58_RS01535 (QAD58_01540) - 298817..299197 (+) 381 WP_000744161.1 hypothetical protein -
  QAD58_RS01540 (QAD58_01545) waaF 299386..300435 (-) 1050 WP_286448545.1 lipopolysaccharide heptosyltransferase II Regulator
  QAD58_RS01545 (QAD58_01550) hisS 300497..301825 (+) 1329 WP_120938820.1 histidine--tRNA ligase -
  QAD58_RS01550 (QAD58_01555) asd 301812..302852 (+) 1041 WP_286448546.1 aspartate-semialdehyde dehydrogenase -
  QAD58_RS01555 (QAD58_01560) - 303283..304530 (+) 1248 WP_286448547.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39540.38 Da        Isoelectric Point: 9.8892

>NTDB_id=744553 QAD58_RS01540 WP_286448545.1 299386..300435(-) (waaF) [Helicobacter pylori strain BT112]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIIAAPKEYHQVEKYCFLFSQFLKKELDKKIVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLSFN
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASVQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=744553 QAD58_RS01540 WP_286448545.1 299386..300435(-) (waaF) [Helicobacter pylori strain BT112]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAACTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCCCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAATCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGTTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTGGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATCGTTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGTACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.719

97.994

0.37