Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QAP03_RS06500 Genome accession   NZ_CP122955
Coordinates   1380020..1381060 (+) Length   346 a.a.
NCBI ID   WP_286491622.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375020..1386060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP03_RS06480 (QAP03_06475) - 1375111..1375854 (+) 744 WP_286491628.1 carbonic anhydrase -
  QAP03_RS06485 (QAP03_06480) - 1376002..1377171 (-) 1170 WP_286491626.1 DUF874 family protein -
  QAP03_RS06490 (QAP03_06485) asd 1377603..1378643 (-) 1041 WP_286491624.1 aspartate-semialdehyde dehydrogenase -
  QAP03_RS06495 (QAP03_06490) hisS 1378630..1379958 (-) 1329 WP_286491623.1 histidine--tRNA ligase -
  QAP03_RS06500 (QAP03_06495) waaF 1380020..1381060 (+) 1041 WP_286491622.1 lipopolysaccharide heptosyltransferase II Regulator
  QAP03_RS06505 (QAP03_06500) - 1381261..1381425 (-) 165 WP_000744175.1 hypothetical protein -
  QAP03_RS06510 (QAP03_06505) fusA 1381964..1384042 (-) 2079 WP_286491621.1 elongation factor G -
  QAP03_RS06515 (QAP03_06510) rpsG 1384054..1384521 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  QAP03_RS06520 (QAP03_06515) rpsL 1384537..1384944 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 39073.99 Da        Isoelectric Point: 9.9562

>NTDB_id=744538 QAP03_RS06500 WP_286491622.1 1380020..1381060(+) (waaF) [Helicobacter pylori strain BS27-2]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNAPKKIGFNPSASYGSAKRWPASYYAKAAAVLLEKGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSR
NAYNLCGKTSIEELIQCIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLQAAHTLL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=744538 QAP03_RS06500 WP_286491622.1 1380020..1381060(+) (waaF) [Helicobacter pylori strain BS27-2]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGTCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTCCTAAGCCATGCGATAATTTCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACGCCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCCAAAGCCGCTGCTGTTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCGT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAATGCATCGCAATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTATA
A

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.463

97.977

0.367