Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QAP06_RS01715 Genome accession   NZ_CP122954
Coordinates   339776..340825 (-) Length   349 a.a.
NCBI ID   WP_286466072.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS06     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 334776..345825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP06_RS01695 (QAP06_01695) rpsL 335902..336309 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  QAP06_RS01700 (QAP06_01700) rpsG 336325..336792 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  QAP06_RS01705 (QAP06_01705) fusA 336804..338882 (+) 2079 WP_286466069.1 elongation factor G -
  QAP06_RS01710 (QAP06_01710) - 339426..339590 (+) 165 WP_000744175.1 hypothetical protein -
  QAP06_RS01715 (QAP06_01715) waaF 339776..340825 (-) 1050 WP_286466072.1 lipopolysaccharide heptosyltransferase II Regulator
  QAP06_RS01720 (QAP06_01720) hisS 340887..342215 (+) 1329 WP_286466074.1 histidine--tRNA ligase -
  QAP06_RS01725 (QAP06_01725) asd 342202..343242 (+) 1041 WP_286466075.1 aspartate-semialdehyde dehydrogenase -
  QAP06_RS01730 (QAP06_01730) - 343678..344907 (+) 1230 WP_286466078.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39502.31 Da        Isoelectric Point: 9.3691

>NTDB_id=744468 QAP06_RS01715 WP_286466072.1 339776..340825(-) (waaF) [Helicobacter pylori strain BS06]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIECIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=744468 QAP06_RS01715 WP_286466072.1 339776..340825(-) (waaF) [Helicobacter pylori strain BS06]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATAATTTCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTAAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATCTGTGCATGAAATCCATCACGCCCCTTGAAGTCCTAGAAGCCGCCCACACTCTTTTAGA
AAAACCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367