Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   FYK59_RS02325 Genome accession   NZ_AP019853
Coordinates   448927..449538 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SS3160     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443927..454538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK59_RS02300 (NGSS3160_04390) - 444357..444938 (-) 582 WP_047923823.1 superoxide dismutase -
  FYK59_RS02305 (NGSS3160_04400) dnaB 445102..446508 (+) 1407 WP_047917169.1 replicative DNA helicase -
  FYK59_RS02310 (NGSS3160_04410) pilH 446663..447328 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FYK59_RS02315 (NGSS3160_04420) pilV 447360..447971 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  FYK59_RS02320 (NGSS3160_04430) pilJ 447968..448948 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  FYK59_RS02325 (NGSS3160_04440) pilK 448927..449538 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FYK59_RS02330 (NGSS3160_04450) pilL 449540..450013 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  FYK59_RS02335 (NGSS3160_04460) - 450083..450391 (-) 309 WP_126356570.1 AzlD family protein -
  FYK59_RS02340 - 450388..451095 (-) 708 Protein_461 AzlC family ABC transporter permease -
  FYK59_RS02345 (NGSS3160_04480) dut 451261..451713 (+) 453 WP_103195211.1 dUTP diphosphatase -
  FYK59_RS02350 (NGSS3160_04490) dapC 451791..452978 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  FYK59_RS02355 (NGSS3160_04500) yaaA 453289..454068 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=74432 FYK59_RS02325 WP_003687918.1 448927..449538(+) (pilK) [Neisseria gonorrhoeae strain SS3160]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=74432 FYK59_RS02325 WP_003687918.1 448927..449538(+) (pilK) [Neisseria gonorrhoeae strain SS3160]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment