Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QAP01_RS01695 Genome accession   NZ_CP122950
Coordinates   334791..335840 (-) Length   349 a.a.
NCBI ID   WP_286498468.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS28-1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 329791..340840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP01_RS01675 (QAP01_01675) rpsL 330912..331319 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  QAP01_RS01680 (QAP01_01680) rpsG 331335..331801 (+) 467 Protein_327 30S ribosomal protein S7 -
  QAP01_RS01685 (QAP01_01685) fusA 331813..333891 (+) 2079 WP_015643837.1 elongation factor G -
  QAP01_RS01690 (QAP01_01690) - 334434..334598 (+) 165 WP_000744175.1 hypothetical protein -
  QAP01_RS01695 (QAP01_01695) waaF 334791..335840 (-) 1050 WP_286498468.1 lipopolysaccharide heptosyltransferase II Regulator
  QAP01_RS01700 (QAP01_01700) hisS 335902..337230 (+) 1329 WP_021309425.1 histidine--tRNA ligase -
  QAP01_RS01705 (QAP01_01705) asd 337217..338257 (+) 1041 WP_286498756.1 aspartate-semialdehyde dehydrogenase -
  QAP01_RS01710 (QAP01_01710) - 338691..340094 (+) 1404 WP_286498469.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39512.20 Da        Isoelectric Point: 9.5710

>NTDB_id=744309 QAP01_RS01695 WP_286498468.1 334791..335840(-) (waaF) [Helicobacter pylori strain BS28-1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKVEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLTKGSLKNPLLFH
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=744309 QAP01_RS01695 WP_286498468.1 334791..335840(-) (waaF) [Helicobacter pylori strain BS28-1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCACATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAGTAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGCTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCTAAAGAGT
ATCATCAAGTAGAAAAGTATTGCTTTTTATTTTCACAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTATTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCACTAAAGGCTCATTAAAAAACCCCTTATTATTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCCAGCGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.719

97.994

0.37