Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAP00_RS03030 Genome accession   NZ_CP122949
Coordinates   628717..628974 (-) Length   85 a.a.
NCBI ID   WP_309256885.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS22     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 623717..633974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP00_RS03020 (QAP00_03025) - 624266..626298 (-) 2033 Protein_577 type IA DNA topoisomerase -
  QAP00_RS03025 (QAP00_03030) comB4 626301..628670 (-) 2370 WP_309256884.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP00_RS03030 (QAP00_03035) comB3 628717..628974 (-) 258 WP_309256885.1 virB3 type IV secretion protein Machinery gene
  QAP00_RS03035 (QAP00_03040) - 628975..629277 (-) 303 WP_031247542.1 hypothetical protein -
  QAP00_RS03040 (QAP00_03045) - 629274..630798 (-) 1525 Protein_581 hypothetical protein -
  QAP00_RS03050 (QAP00_03055) - 630805..631097 (-) 293 Protein_582 hypothetical protein -
  QAP00_RS03055 (QAP00_03060) - 631117..631896 (-) 780 WP_309256887.1 hypothetical protein -
  QAP00_RS03060 (QAP00_03065) - 632115..632840 (-) 726 WP_000646773.1 NYN domain-containing protein -
  QAP00_RS03065 (QAP00_03070) ruvC 632971..633444 (+) 474 WP_309256888.1 crossover junction endodeoxyribonuclease RuvC -

Sequence

Protein


Download         Length: 85 a.a.        Molecular weight: 9907.65 Da        Isoelectric Point: 4.8782

>NTDB_id=744277 QAP00_RS03030 WP_309256885.1 628717..628974(-) (comB3) [Helicobacter pylori strain BS22]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGFCVFVFYILEFFDEDITAILHALFTLRTGA
RNYYA

Nucleotide


Download         Length: 258 bp        

>NTDB_id=744277 QAP00_RS03030 WP_309256885.1 628717..628974(-) (comB3) [Helicobacter pylori strain BS22]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTAGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTACGCTATGGGTTTTTGTGTGT
TTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGAACAGGAGCT
AGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

43.75

94.118

0.412