Detailed information NTG0744275

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: QAP00_RS03005
• Genome accession: NZ_CP122949
• Coordinates: 620210..621442 (-)
• Length: 410 a.a.
• NCBI ID: WP_309256881.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS22
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 615210..626442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP00_RS02965 (QAP00_02970)	-	615329..617056 (-)	1728	WP_309256876.1	type IV secretory system conjugative DNA transfer family protein	-
QAP00_RS02970 (QAP00_02975)	-	617057..617614 (-)	558	WP_097557223.1	hypothetical protein	-
QAP00_RS02975 (QAP00_02980)	-	617615..617905 (-)	291	WP_309256877.1	hypothetical protein	-
QAP00_RS02980 (QAP00_02985)	-	617902..618357 (-)	456	WP_309256879.1	mobilization protein	-
QAP00_RS02985 (QAP00_02990)	-	618354..619295 (-)	942	WP_309256880.1	ATPase, T2SS/T4P/T4SS family	-
QAP00_RS02990 (QAP00_02995)	-	619295..619594 (-)	300	WP_000660135.1	hypothetical protein	-
QAP00_RS02995 (QAP00_03000)	-	619591..619854 (-)	264	WP_000564647.1	hypothetical protein	-
QAP00_RS03000 (QAP00_03005)	-	619847..620140 (-)	294	WP_000671327.1	hypothetical protein	-
QAP00_RS03005 (QAP00_03010)	comB10	620210..621442 (-)	1233	WP_309256881.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP00_RS03010 (QAP00_03015)	-	621439..622980 (-)	1542	WP_309256882.1	TrbG/VirB9 family P-type conjugative transfer protein	-
QAP00_RS03015 (QAP00_03020)	-	622980..624149 (-)	1170	WP_309256883.1	VirB8/TrbF family protein	-
QAP00_RS03020 (QAP00_03025)	-	624266..626298 (-)	2033	Protein_577	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 46455.54 Da
• Isoelectric Point: 10.0077

>NTDB_id=744275 QAP00_RS03005 WP_309256881.1 620210..621442(-) (comB10) [Helicobacter pylori strain BS22]
MKKLLLLLEHKIIKIGLIIVIVLVSFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKFRLVILASRISSQKETQPPISIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFFN
EEKEQNNDTK

Nucleotide

• Length: 1233 bp

>NTDB_id=744275 QAP00_RS03005 WP_309256881.1 620210..621442(-) (comB10) [Helicobacter pylori strain BS22]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGTTAGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCTTTCAACTACAATACCGCTAACGAAGAAGAAAAATTCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAATCTCTATAAAAAATAGTGTTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATCCTGAGCGATGCTAAGGGGGCTGATGTTAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGACTACTTATAGGACTTACTAGCGGCCTTACC
GAAGCGATGAAAAACAAAAGGGGCGGTTTTAACCAAAACTATTTTGGAGATTACATGATGCAAATGACGAGGCAAACTGG
TATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAGGAA
GCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTTAAT
GAAGAAAAGGAGCAAAATAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-386)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	45.025	98.049	0.441