Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   K6J86_RS00330 Genome accession   NZ_AP024627
Coordinates   59723..59953 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain BEST3136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54723..64953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J86_RS00300 (BsBEST3136_00480) ridA 54887..55264 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  K6J86_RS00305 (BsBEST3136_00490) spoVG 55459..55752 (+) 294 WP_003218346.1 septation regulator SpoVG -
  K6J86_RS00310 (BsBEST3136_00500) glmU 55945..57315 (+) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  K6J86_RS00315 (BsBEST3136_00510) prsS 57338..58291 (+) 954 WP_014478600.1 ribose-phosphate diphosphokinase -
  K6J86_RS00320 (BsBEST3136_00520) rplYB 58376..58990 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  K6J86_RS00325 (BsBEST3136_00530) pth 59097..59663 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  K6J86_RS00330 (BsBEST3136_00540) subA/fin 59723..59953 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  K6J86_RS00335 (BsBEST3136_00550) mfd 60023..63556 (+) 3534 WP_014478601.1 transcription-repair coupling factor -
  K6J86_RS00340 (BsBEST3136_00560) spoVT 63692..64228 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=74426 K6J86_RS00330 WP_003243417.1 59723..59953(+) (subA/fin) [Bacillus subtilis strain BEST3136]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=74426 K6J86_RS00330 WP_003243417.1 59723..59953(+) (subA/fin) [Bacillus subtilis strain BEST3136]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment