Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QAP02_RS01635 Genome accession   NZ_CP122948
Coordinates   318450..319499 (-) Length   349 a.a.
NCBI ID   WP_286464401.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS21     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 313450..324499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP02_RS01615 (QAP02_01615) rpsL 314412..314819 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  QAP02_RS01620 (QAP02_01620) rpsG 314835..315302 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  QAP02_RS01625 (QAP02_01625) fusA 315314..317392 (+) 2079 WP_286464399.1 elongation factor G -
  QAP02_RS01630 (QAP02_01630) - 317933..318259 (+) 327 WP_000744162.1 hypothetical protein -
  QAP02_RS01635 (QAP02_01635) waaF 318450..319499 (-) 1050 WP_286464401.1 lipopolysaccharide heptosyltransferase II Regulator
  QAP02_RS01640 (QAP02_01640) hisS 319561..320889 (+) 1329 WP_286464403.1 histidine--tRNA ligase -
  QAP02_RS01645 (QAP02_01645) asd 320876..321916 (+) 1041 WP_140611658.1 aspartate-semialdehyde dehydrogenase -
  QAP02_RS01650 (QAP02_01650) - 322351..323460 (+) 1110 WP_286464404.1 DUF874 family protein -
  QAP02_RS01655 (QAP02_01655) - 323694..324437 (-) 744 WP_286464406.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39459.25 Da        Isoelectric Point: 9.6620

>NTDB_id=744228 QAP02_RS01635 WP_286464401.1 318450..319499(-) (waaF) [Helicobacter pylori strain BS21]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGSAITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAARTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=744228 QAP02_RS01635 WP_286464401.1 318450..319499(-) (waaF) [Helicobacter pylori strain BS21]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGTTCAGCCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCTTTTTTCAGGCTGTTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTTTATTATTTAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAGTTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCGCACTCTTTTAGA
AAAACCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.235

97.421

0.372