Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QAD57_RS04775 Genome accession   NZ_CP122947
Coordinates   1016222..1016797 (-) Length   191 a.a.
NCBI ID   WP_286445358.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS07     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1011222..1021797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD57_RS04765 (QAD57_04760) - 1012885..1014153 (-) 1269 WP_286445356.1 restriction endonuclease subunit S -
  QAD57_RS04770 (QAD57_04765) - 1014150..1016189 (-) 2040 WP_286445357.1 N-6 DNA methylase -
  QAD57_RS04775 (QAD57_04770) comFC 1016222..1016797 (-) 576 WP_286445358.1 ComF family protein Machinery gene
  QAD57_RS04780 (QAD57_04775) tmk 1016785..1017360 (-) 576 WP_286445359.1 dTMP kinase -
  QAD57_RS04785 (QAD57_04780) coaD 1017362..1017835 (-) 474 WP_108248263.1 pantetheine-phosphate adenylyltransferase -
  QAD57_RS04790 (QAD57_04785) - 1017835..1018398 (-) 564 WP_000780124.1 UbiX family flavin prenyltransferase -
  QAD57_RS04795 (QAD57_04790) flgA 1018408..1019064 (-) 657 WP_286445360.1 flagellar basal body P-ring formation chaperone FlgA -
  QAD57_RS04800 (QAD57_04795) uvrD 1019061..1021106 (-) 2046 WP_286445361.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21382.91 Da        Isoelectric Point: 8.6712

>NTDB_id=744203 QAD57_RS04775 WP_286445358.1 1016222..1016797(-) (comFC) [Helicobacter pylori strain BS07]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNTISYAGKSLEFRANNPRDFTFKGDEDLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=744203 QAD57_RS04775 WP_286445358.1 1016222..1016797(-) (comFC) [Helicobacter pylori strain BS07]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATATG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGTAATTTAAAAGCCACTTACGGGCGCTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAGATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948