Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QAD57_RS03545 Genome accession   NZ_CP122947
Coordinates   781394..782443 (+) Length   349 a.a.
NCBI ID   WP_286446316.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS07     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 776394..787443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD57_RS03530 (QAD57_03525) - 777421..778545 (-) 1125 Protein_686 DUF874 family protein -
  QAD57_RS03535 (QAD57_03530) asd 778977..780017 (-) 1041 WP_286446314.1 aspartate-semialdehyde dehydrogenase -
  QAD57_RS03540 (QAD57_03535) hisS 780004..781332 (-) 1329 WP_286446315.1 histidine--tRNA ligase -
  QAD57_RS03545 (QAD57_03540) waaF 781394..782443 (+) 1050 WP_286446316.1 lipopolysaccharide heptosyltransferase II Regulator
  QAD57_RS03550 (QAD57_03545) - 782622..783056 (-) 435 WP_000744159.1 hypothetical protein -
  QAD57_RS03555 (QAD57_03550) fusA 783599..785677 (-) 2079 WP_286446317.1 elongation factor G -
  QAD57_RS03560 (QAD57_03555) rpsG 785689..786156 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  QAD57_RS03565 (QAD57_03560) rpsL 786172..786579 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39454.27 Da        Isoelectric Point: 9.6565

>NTDB_id=744196 QAD57_RS03545 WP_286446316.1 781394..782443(+) (waaF) [Helicobacter pylori strain BS07]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVATTLLEKGHEIYFFGAKEDTIVSEEILKLIKGLLKNPSLFH
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHAAASAQTPLIALFGPTDEKETSPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=744196 QAD57_RS03545 WP_286446316.1 781394..782443(+) (waaF) [Helicobacter pylori strain BS07]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCACATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCCCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGTATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCCTCTTATTACGCTGAAGTCGCTACTACTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTCATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCACCTTGTAAAAAGCGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.235

97.421

0.372