Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAD57_RS00165 Genome accession   NZ_CP122947
Coordinates   45619..45903 (-) Length   94 a.a.
NCBI ID   WP_286445838.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS07     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 40619..50903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD57_RS00140 (QAD57_00140) - 41224..42393 (-) 1170 WP_286445836.1 VirB8/TrbF family protein -
  QAD57_RS00145 (QAD57_00145) - 42386..42520 (-) 135 WP_000738749.1 hypothetical protein -
  QAD57_RS00150 (QAD57_00150) comB4 42540..45098 (-) 2559 WP_286445837.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAD57_RS00155 (QAD57_00155) - 45098..45334 (-) 237 WP_180521129.1 hypothetical protein -
  QAD57_RS00160 (QAD57_00160) comB3 45345..45608 (-) 264 WP_001177713.1 hypothetical protein Machinery gene
  QAD57_RS00165 (QAD57_00165) comB2 45619..45903 (-) 285 WP_286445838.1 TrbC/VirB2 family protein Machinery gene
  QAD57_RS00170 (QAD57_00170) - 45900..46379 (-) 480 WP_180598625.1 hypothetical protein -
  QAD57_RS00175 (QAD57_00175) - 46483..47271 (-) 789 WP_120945486.1 integrase -
  QAD57_RS00180 (QAD57_00180) - 47319..47978 (-) 660 WP_286445839.1 DEAD/DEAH box helicase family protein -
  QAD57_RS00185 (QAD57_00185) - 48034..48168 (+) 135 WP_001146209.1 hypothetical protein -
  QAD57_RS00190 (QAD57_00190) - 48152..48836 (-) 685 Protein_38 type I restriction endonuclease -
  QAD57_RS00195 (QAD57_00195) - 48884..50779 (-) 1896 WP_286445840.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10709.03 Da        Isoelectric Point: 10.7161

>NTDB_id=744183 QAD57_RS00165 WP_286445838.1 45619..45903(-) (comB2) [Helicobacter pylori strain BS07]
MKKLSYFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=744183 QAD57_RS00165 WP_286445838.1 45619..45903(-) (comB2) [Helicobacter pylori strain BS07]
ATGAAAAAATTAAGTTATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

56.044

96.809

0.543