Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   QAD57_RS00130 Genome accession   NZ_CP122947
Coordinates   38352..39554 (-) Length   400 a.a.
NCBI ID   WP_140528722.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS07     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33352..44554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD57_RS00105 (QAD57_00105) - 33574..34092 (-) 519 WP_286445832.1 replication regulatory RepB family protein -
  QAD57_RS00110 (QAD57_00110) - 34089..35031 (-) 943 Protein_22 CpaF/VirB11 family protein -
  QAD57_RS00115 (QAD57_00115) - 35051..35308 (-) 258 WP_286445833.1 hypothetical protein -
  QAD57_RS00120 (QAD57_00120) - 35326..36303 (-) 978 WP_286445834.1 hypothetical protein -
  QAD57_RS00125 (QAD57_00125) - 36316..38368 (-) 2053 Protein_25 collagen-like protein -
  QAD57_RS00130 (QAD57_00130) comB10 38352..39554 (-) 1203 WP_140528722.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAD57_RS00135 (QAD57_00135) - 39551..41227 (-) 1677 Protein_27 TrbG/VirB9 family P-type conjugative transfer protein -
  QAD57_RS00140 (QAD57_00140) - 41224..42393 (-) 1170 WP_286445836.1 VirB8/TrbF family protein -
  QAD57_RS00145 (QAD57_00145) - 42386..42520 (-) 135 WP_000738749.1 hypothetical protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44736.44 Da        Isoelectric Point: 9.9651

>NTDB_id=744180 QAD57_RS00130 WP_140528722.1 38352..39554(-) (comB10) [Helicobacter pylori strain BS07]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=744180 QAD57_RS00130 WP_140528722.1 38352..39554(-) (comB10) [Helicobacter pylori strain BS07]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAACCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTGCTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AAGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

52.926

98.25

0.52