Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QAP07_RS06665 Genome accession   NZ_CP122946
Coordinates   1418123..1419172 (+) Length   349 a.a.
NCBI ID   WP_286444384.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS31     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1413123..1424172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP07_RS06645 (QAP07_06645) - 1413147..1413890 (+) 744 WP_286444376.1 carbonic anhydrase -
  QAP07_RS06650 (QAP07_06650) - 1414117..1415280 (-) 1164 WP_286444378.1 DUF874 family protein -
  QAP07_RS06655 (QAP07_06655) asd 1415706..1416746 (-) 1041 WP_286444380.1 aspartate-semialdehyde dehydrogenase -
  QAP07_RS06660 (QAP07_06660) hisS 1416733..1418061 (-) 1329 WP_286444382.1 histidine--tRNA ligase -
  QAP07_RS06665 (QAP07_06665) waaF 1418123..1419172 (+) 1050 WP_286444384.1 lipopolysaccharide heptosyltransferase II Regulator
  QAP07_RS06670 (QAP07_06670) - 1419320..1419538 (-) 219 WP_000744170.1 hypothetical protein -
  QAP07_RS06675 (QAP07_06675) - 1419756..1420745 (+) 990 WP_286444386.1 aldo/keto reductase -
  QAP07_RS06680 (QAP07_06680) fusA 1421287..1423365 (-) 2079 WP_286444388.1 elongation factor G -
  QAP07_RS06685 (QAP07_06685) rpsG 1423377..1423844 (-) 468 WP_001254365.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39481.09 Da        Isoelectric Point: 9.0946

>NTDB_id=744177 QAP07_RS06665 WP_286444384.1 1418123..1419172(+) (waaF) [Helicobacter pylori strain BS31]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKESVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEAAAALLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHAAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=744177 QAP07_RS06665 WP_286444384.1 1418123..1419172(+) (waaF) [Helicobacter pylori strain BS31]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCTGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTCGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAGAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTCAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGCCGCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCCAAAGAAGATATTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCTCTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGCGGCTGCTAGCGCGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.427

97.994

0.367