Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QDX07_RS18690 Genome accession   NZ_CP122938
Coordinates   3770993..3771598 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ETEC1701     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3765993..3776598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX07_RS18670 (QDX07_18670) aes 3766134..3767093 (+) 960 WP_000764314.1 acetyl esterase -
  QDX07_RS18675 (QDX07_18675) hemH 3767090..3768052 (-) 963 WP_001250117.1 ferrochelatase -
  QDX07_RS18680 (QDX07_18680) adk 3768184..3768828 (-) 645 WP_001220233.1 adenylate kinase -
  QDX07_RS18685 (QDX07_18685) htpG 3769009..3770883 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QDX07_RS18690 (QDX07_18690) recR 3770993..3771598 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QDX07_RS18695 (QDX07_18695) ybaB 3771598..3771927 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QDX07_RS18700 (QDX07_18700) dnaX 3771980..3773910 (-) 1931 Protein_3665 DNA polymerase III subunit gamma/tau -
  QDX07_RS18705 (QDX07_18705) apt 3774039..3774590 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QDX07_RS18710 (QDX07_18710) ybaN 3774743..3775120 (-) 378 WP_001188905.1 DUF454 family protein -
  QDX07_RS18715 (QDX07_18715) priC 3775190..3775717 (+) 528 WP_062875964.1 primosomal replication protein N'' -
  QDX07_RS18720 (QDX07_18720) rsmS 3775731..3775895 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  QDX07_RS18725 (QDX07_18725) tnpA 3776005..3776463 (-) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=744110 QDX07_RS18690 WP_001195025.1 3770993..3771598(-) (recR) [Escherichia coli strain ETEC1701]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=744110 QDX07_RS18690 WP_001195025.1 3770993..3771598(-) (recR) [Escherichia coli strain ETEC1701]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443