Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDX07_RS15555 Genome accession   NZ_CP122938
Coordinates   3136974..3137603 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ETEC1701     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3131974..3142603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX07_RS15540 (QDX07_15540) helD 3132216..3134270 (-) 2055 WP_063085342.1 DNA helicase IV -
  QDX07_RS15545 (QDX07_15545) yccF 3134393..3134839 (+) 447 WP_063085343.1 YccF domain-containing protein -
  QDX07_RS15550 (QDX07_15550) yccS 3134849..3137011 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QDX07_RS15555 (QDX07_15555) sxy/tfoX 3136974..3137603 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDX07_RS15560 (QDX07_15560) sulA 3137822..3138331 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  QDX07_RS15565 (QDX07_15565) ompA 3138688..3139740 (+) 1053 WP_000750418.1 porin OmpA -
  QDX07_RS15570 (QDX07_15570) matP 3139816..3140268 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QDX07_RS15575 (QDX07_15575) ycbZ 3140454..3142214 (+) 1761 WP_063085344.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=744103 QDX07_RS15555 WP_000839153.1 3136974..3137603(-) (sxy/tfoX) [Escherichia coli strain ETEC1701]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=744103 QDX07_RS15555 WP_000839153.1 3136974..3137603(-) (sxy/tfoX) [Escherichia coli strain ETEC1701]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1