Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K5706_RS13730 Genome accession   NZ_AP019849
Coordinates   3021624..3022394 (+) Length   256 a.a.
NCBI ID   WP_221070467.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya249     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3016624..3027394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5706_RS13715 (VA249_25850) - 3017734..3020052 (+) 2319 WP_221070463.1 Tex family protein -
  K5706_RS13720 (VA249_25860) - 3020180..3020644 (-) 465 WP_128812006.1 ATP-dependent Lon protease -
  K5706_RS13725 (VA249_25870) bioH 3020775..3021539 (-) 765 WP_221070465.1 pimeloyl-ACP methyl ester esterase BioH -
  K5706_RS13730 comF 3021624..3022394 (+) 771 WP_221070467.1 ComF family protein Machinery gene
  K5706_RS13735 (VA249_25900) nfuA 3022492..3023076 (+) 585 WP_128812012.1 Fe-S biogenesis protein NfuA -
  K5706_RS13740 (VA249_25910) nudE 3023245..3023808 (+) 564 WP_211915593.1 ADP compounds hydrolase NudE -
  K5706_RS13745 (VA249_25920) cysQ 3023871..3024698 (+) 828 WP_221070469.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K5706_RS13750 (VA249_25930) - 3025094..3025855 (-) 762 WP_221068483.1 type II secretion system protein N -
  K5706_RS13755 (VA249_25940) - 3025857..3026348 (-) 492 WP_221069762.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28857.25 Da        Isoelectric Point: 8.5633

>NTDB_id=74410 K5706_RS13730 WP_221070467.1 3021624..3022394(+) (comF) [Vibrio alfacsensis strain 04Ya249]
MLSHQWQNIMHCVLGSQCGLCRFPIDAYQATNPLRWCEHCFAQLNPIQRCARCGLSMINEQGSANGLVSANPAPQIDQAK
TQCGACLRDPPPWQRLFTLGDYDFPLSVQVQRFKDHAEPWHVNALTQLLAQRIEHPAPVITCVPLHWQRYLKRGFNQSHT
LARYLANHLEVRFEPNVFKRIKSAPSQRGHKKSNRELNLKGAFALKGKVRDSHVAIVDDVVTTGSTVRQLCDLLLEVGVE
SIDIYCICRTPAPGSL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=74410 K5706_RS13730 WP_221070467.1 3021624..3022394(+) (comF) [Vibrio alfacsensis strain 04Ya249]
ATGTTATCTCATCAATGGCAAAACATCATGCACTGTGTGTTGGGCAGTCAATGTGGTTTATGTCGATTTCCAATTGACGC
CTATCAAGCGACCAATCCACTACGCTGGTGCGAGCACTGTTTTGCTCAACTTAACCCCATACAACGTTGCGCTCGGTGCG
GTTTATCGATGATAAATGAGCAGGGTAGTGCCAACGGTCTTGTCTCTGCCAACCCAGCGCCTCAAATCGACCAAGCCAAA
ACACAATGTGGAGCATGCTTACGCGATCCCCCGCCATGGCAGCGCTTGTTCACACTGGGTGATTATGACTTCCCACTCTC
AGTCCAAGTTCAACGATTTAAAGATCACGCTGAACCTTGGCACGTTAATGCACTCACTCAATTACTTGCACAACGAATTG
AGCATCCCGCGCCAGTTATCACCTGCGTTCCACTGCATTGGCAACGGTACCTAAAGCGAGGTTTCAATCAAAGCCATACT
CTTGCAAGATACTTAGCAAACCACCTTGAGGTAAGGTTTGAACCCAACGTGTTTAAACGCATCAAGAGTGCTCCATCACA
ACGGGGACATAAGAAAAGCAACCGGGAGCTAAATTTGAAAGGTGCATTTGCACTAAAAGGCAAAGTGCGCGATTCTCATG
TCGCAATTGTTGATGATGTCGTCACAACGGGCAGTACCGTCCGACAATTATGTGATTTACTACTTGAAGTCGGTGTAGAA
AGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCAGGCTCACTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(159-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.703

100

0.707
  comF Vibrio cholerae strain A1552

46.64

98.828

0.461

Multiple sequence alignment