Detailed information NTG0744078

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDX07_RS05165
• Genome accession: NZ_CP122938
• Coordinates: 1083936..1084928 (+)
• Length: 330 a.a.
• NCBI ID: WP_063086191.1
• Uniprot ID: -
• Organism: Escherichia coli strain ETEC1701
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1078936..1089928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDX07_RS05135 (QDX07_05135)	ispD	1078997..1079707 (+)	711	WP_063086188.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDX07_RS05140 (QDX07_05140)	ispF	1079707..1080186 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDX07_RS05145 (QDX07_05145)	truD	1080183..1081232 (+)	1050	WP_063086189.1	tRNA pseudouridine(13) synthase TruD	-
QDX07_RS05150 (QDX07_05150)	surE	1081213..1081974 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDX07_RS05155 (QDX07_05155)	pcm	1081968..1082594 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDX07_RS05160 (QDX07_05160)	nlpD	1082779..1083873 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDX07_RS05165 (QDX07_05165)	rpoS	1083936..1084928 (+)	993	WP_063086191.1	RNA polymerase sigma factor RpoS	Regulator
QDX07_RS05170 (QDX07_05170)	-	1085048..1085455 (-)	408	WP_001208077.1	MarR family transcriptional regulator	-
QDX07_RS05175 (QDX07_05175)	-	1085602..1086195 (+)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QDX07_RS05180 (QDX07_05180)	-	1086195..1087622 (+)	1428	WP_021513182.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QDX07_RS05185 (QDX07_05185)	-	1087633..1087869 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QDX07_RS05190 (QDX07_05190)	pphB	1087910..1088566 (-)	657	WP_001590575.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38000.90 Da
• Isoelectric Point: 4.5597

>NTDB_id=744078 QDX07_RS05165 WP_063086191.1 1083936..1084928(+) (rpoS) [Escherichia coli strain ETEC1701]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILVD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=744078 QDX07_RS05165 WP_063086191.1 1083936..1084928(+) (rpoS) [Escherichia coli strain ETEC1701]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGTCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715