Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   K5706_RS09560 Genome accession   NZ_AP019849
Coordinates   2110831..2112234 (-) Length   467 a.a.
NCBI ID   WP_221069735.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya249     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2105831..2117234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5706_RS09525 (VA249_17870) moaE 2106410..2106865 (-) 456 WP_221069730.1 molybdopterin synthase catalytic subunit MoaE -
  K5706_RS09530 (VA249_17880) moaD 2106867..2107124 (-) 258 WP_221069114.1 molybdopterin synthase sulfur carrier subunit -
  K5706_RS09535 (VA249_17890) moaC 2107124..2107600 (-) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  K5706_RS09540 (VA249_17900) moaB 2107626..2108138 (-) 513 WP_128811251.1 molybdenum cofactor biosynthesis protein B -
  K5706_RS09545 (VA249_17910) moaA 2108235..2109224 (-) 990 WP_221069113.1 GTP 3',8-cyclase MoaA -
  K5706_RS09550 (VA249_17920) - 2109520..2110413 (+) 894 WP_221069112.1 YvcK family protein -
  K5706_RS09555 (VA249_17930) luxU 2110490..2110834 (-) 345 WP_221069733.1 quorum-sensing phosphorelay protein LuxU -
  K5706_RS09560 (VA249_17940) luxO 2110831..2112234 (-) 1404 WP_221069735.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  K5706_RS09565 (VA249_17950) uvrB 2112542..2114572 (-) 2031 WP_221069737.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51922.42 Da        Isoelectric Point: 6.8236

>NTDB_id=74403 K5706_RS09560 WP_221069735.1 2110831..2112234(-) (luxO) [Vibrio alfacsensis strain 04Ya249]
MQHKPDGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGREAIDSLNHRTPDLILLDLRLPDMTGMDVLHKVKDSH
PSVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEANNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQDVIDKFNRYEWPGNVRQLQNVLRNIVVLNNGKEITIDMLPPPLNMPLVGRA
IVSPMPQKAITASDITPLWMTEKEAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWGTKEEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=74403 K5706_RS09560 WP_221069735.1 2110831..2112234(-) (luxO) [Vibrio alfacsensis strain 04Ya249]
ATGCAACATAAACCAGATGGTCAAAAGTCTCGTTATCTTTTGATGGTTGAAGATACCGCGTCTGTCGCCGCATTATACCG
TTCATACCTTACGCCTCTTGGCATCGACATTAACATTGTCGGTACTGGCCGAGAAGCGATCGACAGTTTAAATCATCGCA
CCCCTGACCTTATTCTCTTAGATCTTCGCTTGCCAGATATGACCGGCATGGATGTGTTGCATAAGGTTAAAGATAGTCAC
CCAAGTGTGCCTGTTATCTTCATGACTGCTCACGGCTCGATTGATACCGCTGTAGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTGATCAAACCATGTGAAGCAGACCGATTACGCGTTACCGTAAATAATGCGATTCGCAAAGCCACTAAGTTGAAAA
ACGAAGCTAACAATCCGGGCAACCAAAGTTATCAAGGTTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGGACT
ATTGACTCTGCAGCCAGTAGTAAAGCGAGTATCTTTATCACCGGTGAGAGTGGTACGGGTAAAGAAGTGTGTGCTGAAGC
CATTCACGCAGCGAGTAAACGCGGTGATAAGCCATTTATTGCCATTAACTGTGCTGCCATTCCAAAAGACCTTATTGAGA
GCGAGTTGTTTGGTCACGTAAAAGGTGCGTTTACGGGCGCTGCTAATGATCGTCAAGGCGCCGCAGAACTCGCCGATGGT
GGTACCTTGTTCCTTGATGAGTTGTGTGAAATGGACTTGGATTTACAAACCAAGCTTTTGCGATTCATCCAAACGGGGAC
ATTCCAAAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTTGTATGTGCGACGAACCGAGACCCATGGAAAG
AGGTACAAGAGGGGCGCTTTCGTGAAGATTTGTATTACCGATTATATGTGATTCCTTTGCACCTACCACCACTGAGAGAA
CGTGGTGAGGATGTTATCGAAATCGCTTATTCGTTGTTAGGTTACATGTCTCATGAAGAAGGTAAGAACTTTGTTCGTTT
CTCTCAAGACGTGATTGATAAATTTAATCGCTATGAGTGGCCAGGAAACGTTCGTCAATTGCAAAACGTTCTGAGGAATA
TCGTGGTGCTAAATAATGGTAAAGAGATTACCATCGATATGCTACCGCCTCCGCTTAATATGCCGCTTGTTGGCCGTGCC
ATTGTAAGCCCAATGCCTCAAAAGGCGATAACGGCGTCAGACATTACCCCGCTATGGATGACTGAAAAAGAAGCCATTGA
GCAGGCGATCAAGGCTTGTGATGGGAATATTCCTAGAGCCGCGGGTTATTTAGATGTCAGCCCATCAACGATTTATCGTA
AGCTCCAAGCTTGGGGTACGAAAGAAGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

84.34

95.717

0.807

Multiple sequence alignment