Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDX05_RS14650 Genome accession   NZ_CP122929
Coordinates   2930468..2931097 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ETEC1702     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2925468..2936097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX05_RS14635 (QDX05_14630) helD 2925710..2927764 (-) 2055 WP_001295354.1 DNA helicase IV -
  QDX05_RS14640 (QDX05_14635) yccF 2927887..2928333 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QDX05_RS14645 (QDX05_14640) yccS 2928343..2930505 (+) 2163 WP_000875058.1 YccS family putative transporter -
  QDX05_RS14650 (QDX05_14645) sxy/tfoX 2930468..2931097 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDX05_RS14655 (QDX05_14650) sulA 2931316..2931825 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QDX05_RS14660 (QDX05_14655) ompA 2932181..2933221 (+) 1041 WP_001400178.1 porin OmpA -
  QDX05_RS14665 (QDX05_14660) matP 2933297..2933749 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QDX05_RS14670 (QDX05_14665) ycbZ 2933935..2935695 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=744025 QDX05_RS14650 WP_000839153.1 2930468..2931097(-) (sxy/tfoX) [Escherichia coli strain ETEC1702]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=744025 QDX05_RS14650 WP_000839153.1 2930468..2931097(-) (sxy/tfoX) [Escherichia coli strain ETEC1702]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1