Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   K6K02_RS18495 Genome accession   NZ_AP024626
Coordinates   3534867..3535580 (-) Length   237 a.a.
NCBI ID   WP_121549135.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3125     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3529867..3540580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K02_RS18475 (BsBEST3125_35520) ghrB 3530011..3530988 (+) 978 WP_010886621.1 bifunctional glyoxylate/hydroxypyruvate reductase B -
  K6K02_RS18480 (BsBEST3125_35530) psdB 3531026..3532966 (-) 1941 WP_003243432.1 lantibiotic ABC transporter permease PsdB -
  K6K02_RS18485 (BsBEST3125_35540) psdA 3532941..3533720 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  K6K02_RS18490 (BsBEST3125_35550) psdS 3533803..3534873 (-) 1071 WP_003242699.1 two-component sensor histidine kinase PsdS -
  K6K02_RS18495 (BsBEST3125_35560) braR 3534867..3535580 (-) 714 WP_121549135.1 two-component system response regulator PsdR Regulator
  K6K02_RS18500 (BsBEST3125_35570) - 3535727..3535935 (+) 209 Protein_3602 hypothetical protein -
  K6K02_RS18505 (BsBEST3125_35580) yvcN 3535971..3536735 (-) 765 WP_015251150.1 arylamine N-acetyltransferase -
  K6K02_RS18510 (BsBEST3125_35590) crh 3536736..3536993 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  K6K02_RS18515 (BsBEST3125_35600) whiA 3537017..3537967 (-) 951 WP_003228147.1 DNA-binding protein WhiA -
  K6K02_RS18520 (BsBEST3125_35610) mgfK 3537990..3538943 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  K6K02_RS18525 (BsBEST3125_35620) rapZ 3538945..3539832 (-) 888 WP_003243903.1 RNase adapter RapZ -
  K6K02_RS18530 (BsBEST3125_35630) rppI 3539857..3540333 (-) 477 WP_014481002.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27514.39 Da        Isoelectric Point: 4.6062

>NTDB_id=74400 K6K02_RS18495 WP_121549135.1 3534867..3535580(-) (braR) [Bacillus subtilis strain BEST3125]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RIDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=74400 K6K02_RS18495 WP_121549135.1 3534867..3535580(-) (braR) [Bacillus subtilis strain BEST3125]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGATTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGATCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGTGGGCTGACGATTTATCCTGATCAAAATGAGGCCGAATGGAACAGCTCCCGTATTCTGTTTTCCCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTTTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAATCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGTTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.982

94.515

0.435

Multiple sequence alignment