Detailed information NTG0743919

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDX14_RS05220
• Genome accession: NZ_CP122923
• Coordinates: 1076029..1077021 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081533.1
• Uniprot ID: -
• Organism: Escherichia coli strain ETEC1703
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1071029..1082021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDX14_RS05190 (QDX14_05190)	ispD	1071090..1071800 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDX14_RS05195 (QDX14_05195)	ispF	1071800..1072279 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDX14_RS05200 (QDX14_05200)	truD	1072276..1073325 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QDX14_RS05205 (QDX14_05205)	surE	1073306..1074067 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDX14_RS05210 (QDX14_05210)	pcm	1074061..1074687 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDX14_RS05215 (QDX14_05215)	nlpD	1074872..1075966 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDX14_RS05220 (QDX14_05220)	rpoS	1076029..1077021 (+)	993	WP_000081533.1	RNA polymerase sigma factor RpoS	Regulator
QDX14_RS05225 (QDX14_05225)	ygbN	1077115..1078479 (-)	1365	WP_000104441.1	GntP family transporter	-
QDX14_RS05230 (QDX14_05230)	ygbM	1078568..1079344 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QDX14_RS05235 (QDX14_05235)	ygbL	1079349..1079986 (-)	638	Protein_1026	aldolase	-
QDX14_RS05240 (QDX14_05240)	otnK	1079983..1081245 (-)	1263	WP_094336669.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37986.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=743919 QDX14_RS05220 WP_000081533.1 1076029..1077021(+) (rpoS) [Escherichia coli strain ETEC1703]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNIYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=743919 QDX14_RS05220 WP_000081533.1 1076029..1077021(+) (rpoS) [Escherichia coli strain ETEC1703]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACATTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.375	97.879	0.718