Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K5706_RS02810 Genome accession   NZ_AP019849
Coordinates   576669..577187 (+) Length   172 a.a.
NCBI ID   WP_221068093.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya249     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 571669..582187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5706_RS02800 (VA249_04690) gshA 574360..575928 (+) 1569 WP_221070940.1 glutamate--cysteine ligase -
  K5706_RS02805 (VA249_04700) - 575974..576579 (+) 606 WP_211915993.1 hypothetical protein -
  K5706_RS02810 (VA249_04710) luxS 576669..577187 (+) 519 WP_221068093.1 S-ribosylhomocysteine lyase Regulator
  K5706_RS02815 (VA249_04720) - 577307..578581 (-) 1275 WP_128810207.1 HlyC/CorC family transporter -
  K5706_RS02820 (VA249_04730) - 578826..579620 (-) 795 WP_128810208.1 cytochrome C assembly family protein -
  K5706_RS02825 (VA249_04740) ffh 579834..581213 (+) 1380 WP_221070941.1 signal recognition particle protein -
  K5706_RS02830 (VA249_04750) rpsP 581423..581671 (+) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19138.92 Da        Isoelectric Point: 4.8563

>NTDB_id=74390 K5706_RS02810 WP_221068093.1 576669..577187(+) (luxS) [Vibrio alfacsensis strain 04Ya249]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDRVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKLIAQNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=74390 K5706_RS02810 WP_221068093.1 576669..577187(+) (luxS) [Vibrio alfacsensis strain 04Ya249]
ATGCCTTTATTAGACAGTTTTACCGTAGATCACACTCGTATGCATGCCCCAGCGGTTCGCGTGGCAAAAACAATGCAAAC
TCCAAAAGGGGATACGATCACAGTCTTTGATTTACGTTTTACCGCCCCAAACAAAGACATTCTTTCTGAGAAAGGGATCC
ATACGTTAGAGCACTTGTATGCTGGCTTTATGCGCAATCACCTAAATGGTGACCGCGTTGAAATCATTGATATTTCGCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTAATTGGTACGCCTTCAGAGCAACAAGTGGCTGACGCTTGGATTGCAGC
AATGGAAGATGTGCTAAAGGTTGAGAGTCAAAATAAAATCCCAGAGCTGAATGAATACCAATGTGGTACGGCTGCGATGC
ATTCATTGGATGAAGCAAAGCTAATCGCGCAGAATATTCTTGATGCGGGAGTTTCAGTCAACAAGAACGATGAACTTGCT
TTACCAGAATCGATGTTGAAAGAACTTCGTATTGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment