Detailed information NTG0743833

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDX08_RS05255
• Genome accession: NZ_CP122904
• Coordinates: 1075201..1076193 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC1706
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1070201..1081193

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDX08_RS05225 (QDX08_05225)	ispD	1070262..1070972 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDX08_RS05230 (QDX08_05230)	ispF	1070972..1071451 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDX08_RS05235 (QDX08_05235)	truD	1071448..1072497 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
QDX08_RS05240 (QDX08_05240)	surE	1072478..1073239 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDX08_RS05245 (QDX08_05245)	pcm	1073233..1073859 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDX08_RS05250 (QDX08_05250)	nlpD	1074044..1075138 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QDX08_RS05255 (QDX08_05255)	rpoS	1075201..1076193 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDX08_RS05260 (QDX08_05260)	ygbN	1076287..1077651 (-)	1365	WP_000104459.1	GntP family transporter	-
QDX08_RS05265 (QDX08_05265)	ygbM	1077740..1078516 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
QDX08_RS05270 (QDX08_05270)	ygbL	1078521..1079158 (-)	638	Protein_1033	aldolase	-
QDX08_RS05275 (QDX08_05275)	otnK	1079155..1080416 (-)	1262	Protein_1034	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=743833 QDX08_RS05255 WP_000081550.1 1075201..1076193(+) (rpoS) [Escherichia coli strain ETEC1706]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=743833 QDX08_RS05255 WP_000081550.1 1075201..1076193(+) (rpoS) [Escherichia coli strain ETEC1706]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715