Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDX11_RS16850 Genome accession   NZ_CP122876
Coordinates   3334830..3335459 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ETEC1717     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3329830..3340459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX11_RS16830 (QDX11_16830) ycbZ 3330232..3331992 (-) 1761 WP_094336204.1 Lon protease family protein -
  QDX11_RS16835 (QDX11_16835) matP 3332178..3332630 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QDX11_RS16840 (QDX11_16840) ompA 3332705..3333745 (-) 1041 WP_000750416.1 porin OmpA -
  QDX11_RS16845 (QDX11_16845) sulA 3334102..3334611 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QDX11_RS16850 (QDX11_16850) sxy/tfoX 3334830..3335459 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDX11_RS16855 (QDX11_16855) yccS 3335422..3337584 (-) 2163 WP_000875061.1 YccS family putative transporter -
  QDX11_RS16860 (QDX11_16860) yccF 3337594..3338040 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QDX11_RS16865 (QDX11_16865) helD 3338163..3340217 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=743697 QDX11_RS16850 WP_000839153.1 3334830..3335459(+) (sxy/tfoX) [Escherichia coli strain ETEC1717]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=743697 QDX11_RS16850 WP_000839153.1 3334830..3335459(+) (sxy/tfoX) [Escherichia coli strain ETEC1717]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1