Detailed information NTG0743667

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDX11_RS05055
• Genome accession: NZ_CP122876
• Coordinates: 1049024..1050016 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081533.1
• Uniprot ID: -
• Organism: Escherichia coli strain ETEC1717
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1044024..1055016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDX11_RS05025 (QDX11_05025)	ispD	1044085..1044795 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDX11_RS05030 (QDX11_05030)	ispF	1044795..1045274 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDX11_RS05035 (QDX11_05035)	truD	1045271..1046320 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QDX11_RS05040 (QDX11_05040)	surE	1046301..1047062 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDX11_RS05045 (QDX11_05045)	pcm	1047056..1047682 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDX11_RS05050 (QDX11_05050)	nlpD	1047867..1048961 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDX11_RS05055 (QDX11_05055)	rpoS	1049024..1050016 (+)	993	WP_000081533.1	RNA polymerase sigma factor RpoS	Regulator
QDX11_RS05060 (QDX11_05060)	ygbN	1050110..1051474 (-)	1365	WP_000104441.1	GntP family transporter	-
QDX11_RS05065 (QDX11_05065)	ygbM	1051563..1052339 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QDX11_RS05070 (QDX11_05070)	ygbL	1052344..1052982 (-)	639	WP_001278994.1	aldolase	-
QDX11_RS05075 (QDX11_05075)	otnK	1052979..1054241 (-)	1263	WP_094336669.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37986.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=743667 QDX11_RS05055 WP_000081533.1 1049024..1050016(+) (rpoS) [Escherichia coli strain ETEC1717]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNIYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=743667 QDX11_RS05055 WP_000081533.1 1049024..1050016(+) (rpoS) [Escherichia coli strain ETEC1717]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACATTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.375	97.879	0.718