Detailed information NTG0743581

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDX06_RS05050
• Genome accession: NZ_CP122872
• Coordinates: 1049022..1050014 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081533.1
• Uniprot ID: -
• Organism: Escherichia coli strain ETEC1718
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1044022..1055014

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDX06_RS05020 (QDX06_05020)	ispD	1044083..1044793 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDX06_RS05025 (QDX06_05025)	ispF	1044793..1045272 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDX06_RS05030 (QDX06_05030)	truD	1045269..1046318 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QDX06_RS05035 (QDX06_05035)	surE	1046299..1047060 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDX06_RS05040 (QDX06_05040)	pcm	1047054..1047680 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDX06_RS05045 (QDX06_05045)	nlpD	1047865..1048959 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDX06_RS05050 (QDX06_05050)	rpoS	1049022..1050014 (+)	993	WP_000081533.1	RNA polymerase sigma factor RpoS	Regulator
QDX06_RS05055 (QDX06_05055)	ygbN	1050108..1051472 (-)	1365	WP_000104441.1	GntP family transporter	-
QDX06_RS05060 (QDX06_05060)	ygbM	1051561..1052337 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QDX06_RS05065 (QDX06_05065)	ygbL	1052342..1052980 (-)	639	WP_001278994.1	aldolase	-
QDX06_RS05070 (QDX06_05070)	otnK	1052977..1054239 (-)	1263	WP_094336669.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37986.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=743581 QDX06_RS05050 WP_000081533.1 1049022..1050014(+) (rpoS) [Escherichia coli strain ETEC1718]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNIYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=743581 QDX06_RS05050 WP_000081533.1 1049022..1050014(+) (rpoS) [Escherichia coli strain ETEC1718]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACATTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.375	97.879	0.718