Detailed information NTG0743497

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDX04_RS05215
• Genome accession: NZ_CP122868
• Coordinates: 1071547..1072539 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC1721
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1066547..1077539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDX04_RS05185 (QDX04_05185)	ispD	1066608..1067318 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDX04_RS05190 (QDX04_05190)	ispF	1067318..1067797 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDX04_RS05195 (QDX04_05195)	truD	1067794..1068843 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QDX04_RS05200 (QDX04_05200)	surE	1068824..1069585 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDX04_RS05205 (QDX04_05205)	pcm	1069579..1070205 (+)	627	WP_032142000.1	protein-L-isoaspartate O-methyltransferase	-
QDX04_RS05210 (QDX04_05210)	nlpD	1070390..1071484 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QDX04_RS05215 (QDX04_05215)	rpoS	1071547..1072539 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDX04_RS05220 (QDX04_05220)	-	1072660..1073067 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
QDX04_RS05225 (QDX04_05225)	-	1073214..1073807 (+)	594	WP_032141999.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QDX04_RS05230 (QDX04_05230)	-	1073807..1075234 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QDX04_RS05235 (QDX04_05235)	-	1075245..1075481 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QDX04_RS05240 (QDX04_05240)	ygbN	1075521..1076885 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=743497 QDX04_RS05215 WP_000081550.1 1071547..1072539(+) (rpoS) [Escherichia coli strain ETEC1721]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=743497 QDX04_RS05215 WP_000081550.1 1071547..1072539(+) (rpoS) [Escherichia coli strain ETEC1721]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715