Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QDX04_RS02675 Genome accession   NZ_CP122868
Coordinates   547937..549370 (-) Length   477 a.a.
NCBI ID   WP_000809047.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC1721     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 542937..554370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX04_RS02640 (QDX04_02640) elbB 543629..544281 (+) 653 Protein_516 isoprenoid biosynthesis glyoxalase ElbB -
  QDX04_RS02645 (QDX04_02645) mtgA 544278..545006 (+) 729 WP_000047091.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  QDX04_RS02650 (QDX04_02650) yrbL 545003..545635 (-) 633 WP_000620387.1 PhoP regulatory network protein YrbL -
  QDX04_RS02655 (QDX04_02655) npr 545849..546121 (-) 273 WP_000216791.1 PTS phosphocarrier protein NPr -
  QDX04_RS02660 (QDX04_02660) rapZ 546118..546972 (-) 855 WP_000243741.1 RNase adapter RapZ -
  QDX04_RS02665 (QDX04_02665) ptsN 547018..547509 (-) 492 WP_000183676.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QDX04_RS02670 (QDX04_02670) hpf 547627..547914 (-) 288 WP_001176599.1 ribosome hibernation promoting factor -
  QDX04_RS02675 (QDX04_02675) rpoN/rpoN1 547937..549370 (-) 1434 WP_000809047.1 RNA polymerase factor sigma-54 Machinery gene
  QDX04_RS02680 (QDX04_02680) lptB 549418..550143 (-) 726 WP_000224099.1 LPS export ABC transporter ATP-binding protein -
  QDX04_RS02685 (QDX04_02685) lptA 550150..550707 (-) 558 WP_000669785.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  QDX04_RS02690 (QDX04_02690) lptC 550676..551251 (-) 576 WP_000030537.1 LPS export ABC transporter periplasmic protein LptC -
  QDX04_RS02695 (QDX04_02695) kdsC 551248..551814 (-) 567 WP_000030005.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QDX04_RS02700 (QDX04_02700) kdsD 551835..552821 (-) 987 WP_001295557.1 arabinose-5-phosphate isomerase KdsD -
  QDX04_RS02705 (QDX04_02705) yrbG 552835..553812 (-) 978 WP_000922872.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54051.83 Da        Isoelectric Point: 4.3447

>NTDB_id=743488 QDX04_RS02675 WP_000809047.1 547937..549370(-) (rpoN/rpoN1) [Escherichia coli strain ETEC1721]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPE
ELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDDDSQFIR
SNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=743488 QDX04_RS02675 WP_000809047.1 547937..549370(-) (rpoN/rpoN1) [Escherichia coli strain ETEC1721]
ATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCGATGACGCCACAGCTCCAACAGGCAATTCGTCTGTTGCA
GTTGTCGACGCTGGAACTTCAGCAGGAGCTACAGCAGGCGCTGGAGAGTAATCCGCTGCTTGAGCAAATCGACACTCATG
AAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAA
GAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGA
TGAGCTGCCGGTCTATCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTCGAGCTGACACCGTTTT
CCGACACTGATCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATGACACCGGTTATCTGACTGTCCCGCTGGAAGAT
ATTCTCGAAAGTATGGGCGATGAAGAGATCGACATCGACGAGGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCC
GGTCGGTGTAGCGGCAAAAGATCTGCGTGACTGCCTGCTAATCCAACTCTCCCAATTCGATAAAACCACGCCGTGGCTGG
AAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGT
CTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATCCGCGCCCCGGGCAGTCGATCCAGACTGG
CGAACCTGAGTATGTCATTCCAGATGTGCTGGTGCGTAAGCATAACGGTCACTGGACGGTAGAACTCAACAGTGACAGCA
TTCCGCGTCTGCAAATCAACCAGCACTACGCCTCGATGTGCAATAACGCGCGCAACGATGATGACAGCCAGTTTATCCGC
AGCAATCTGCAGGATGCCAAATGGTTGATCAAGAGTCTGGAAAGCCGTAACGATACGCTACTGCGCGTGAGTCGCTGTAT
CGTTGAACAGCAGCAAGCCTTCTTTGAGCAAGGTGAAGAATATATGAAACCGATGGTACTGGCCGATATCGCCCAGGCTG
TCGAAATGCATGAATCGACGATATCTCGCGTGACCACGCAAAAATACCTGCATAGTCCACGAGGCATTTTTGAACTGAAG
TATTTCTTTTCCAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCACTGGTGAAGAAATT
AATCGCGGCGGAAAACCCAGCGAAACCGTTGAGCGACAGCAAGTTAACCTCTTTACTGTCGGAACAAGGTATCATGGTGG
CACGCCGCACTGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAGCTCGTTTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.223

100

0.465