Detailed information NTG0743414

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDY31_RS05055
• Genome accession: NZ_CP122859
• Coordinates: 1032895..1033887 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC1720
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1027895..1038887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDY31_RS05025 (QDY31_05025)	ispD	1027956..1028666 (+)	711	WP_097740602.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDY31_RS05030 (QDY31_05030)	ispF	1028666..1029145 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDY31_RS05035 (QDY31_05035)	truD	1029142..1030191 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
QDY31_RS05040 (QDY31_05040)	surE	1030172..1030933 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDY31_RS05045 (QDY31_05045)	pcm	1030927..1031553 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDY31_RS05050 (QDY31_05050)	nlpD	1031738..1032832 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QDY31_RS05055 (QDY31_05055)	rpoS	1032895..1033887 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDY31_RS05060 (QDY31_05060)	ygbN	1033981..1035345 (-)	1365	WP_000104441.1	GntP family transporter	-
QDY31_RS05065 (QDY31_05065)	ygbM	1035434..1036210 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QDY31_RS05070 (QDY31_05070)	ygbL	1036215..1036853 (-)	639	WP_001278994.1	aldolase	-
QDY31_RS05075 (QDY31_05075)	otnK	1036850..1038112 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=743414 QDY31_RS05055 WP_000081550.1 1032895..1033887(+) (rpoS) [Escherichia coli strain ETEC1720]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=743414 QDY31_RS05055 WP_000081550.1 1032895..1033887(+) (rpoS) [Escherichia coli strain ETEC1720]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715