Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QDX00_RS16875 Genome accession   NZ_CP122844
Coordinates   3452527..3453132 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ETEC1722     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3447527..3458132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX00_RS16855 (QDX00_16855) aes 3447564..3448523 (+) 960 WP_063501955.1 acetyl esterase -
  QDX00_RS16860 (QDX00_16860) hemH 3448520..3449482 (-) 963 WP_001250088.1 ferrochelatase -
  QDX00_RS16865 (QDX00_16865) adk 3449718..3450362 (-) 645 WP_001220233.1 adenylate kinase -
  QDX00_RS16870 (QDX00_16870) htpG 3450543..3452417 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QDX00_RS16875 (QDX00_16875) recR 3452527..3453132 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QDX00_RS16880 (QDX00_16880) ybaB 3453132..3453461 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QDX00_RS16885 (QDX00_16885) dnaX 3453514..3455445 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QDX00_RS16890 (QDX00_16890) apt 3455574..3456125 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QDX00_RS16895 (QDX00_16895) ybaN 3456278..3456655 (-) 378 WP_001188905.1 DUF454 family protein -
  QDX00_RS16900 (QDX00_16900) priC 3456725..3457252 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  QDX00_RS16905 (QDX00_16905) rsmS 3457266..3457427 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=743364 QDX00_RS16875 WP_001195025.1 3452527..3453132(-) (recR) [Escherichia coli strain ETEC1722]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=743364 QDX00_RS16875 WP_001195025.1 3452527..3453132(-) (recR) [Escherichia coli strain ETEC1722]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443