Detailed information NTG0743329

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDX00_RS05045
• Genome accession: NZ_CP122844
• Coordinates: 1031544..1032536 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC1722
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1026544..1037536

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDX00_RS05015 (QDX00_05015)	ispD	1026605..1027315 (+)	711	WP_097740602.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDX00_RS05020 (QDX00_05020)	ispF	1027315..1027794 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDX00_RS05025 (QDX00_05025)	truD	1027791..1028840 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
QDX00_RS05030 (QDX00_05030)	surE	1028821..1029582 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDX00_RS05035 (QDX00_05035)	pcm	1029576..1030202 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDX00_RS05040 (QDX00_05040)	nlpD	1030387..1031481 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QDX00_RS05045 (QDX00_05045)	rpoS	1031544..1032536 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDX00_RS05050 (QDX00_05050)	ygbN	1032630..1033994 (-)	1365	WP_000104441.1	GntP family transporter	-
QDX00_RS05055 (QDX00_05055)	ygbM	1034083..1034859 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QDX00_RS05060 (QDX00_05060)	ygbL	1034864..1035502 (-)	639	WP_001278994.1	aldolase	-
QDX00_RS05065 (QDX00_05065)	otnK	1035499..1036761 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=743329 QDX00_RS05045 WP_000081550.1 1031544..1032536(+) (rpoS) [Escherichia coli strain ETEC1722]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=743329 QDX00_RS05045 WP_000081550.1 1031544..1032536(+) (rpoS) [Escherichia coli strain ETEC1722]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715