Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QDY29_RS18140 Genome accession   NZ_CP122816
Coordinates   3679886..3680491 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ETEC1731     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3674886..3685491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY29_RS18120 (QDY29_18120) aes 3674923..3675882 (+) 960 Protein_3547 acetyl esterase -
  QDY29_RS18125 (QDY29_18125) hemH 3675879..3676841 (-) 963 WP_001250088.1 ferrochelatase -
  QDY29_RS18130 (QDY29_18130) adk 3677077..3677721 (-) 645 WP_001220233.1 adenylate kinase -
  QDY29_RS18135 (QDY29_18135) htpG 3677902..3679776 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  QDY29_RS18140 (QDY29_18140) recR 3679886..3680491 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QDY29_RS18145 (QDY29_18145) ybaB 3680491..3680820 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QDY29_RS18150 (QDY29_18150) dnaX 3680873..3682804 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QDY29_RS18155 (QDY29_18155) apt 3682933..3683484 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QDY29_RS18160 (QDY29_18160) ybaN 3683637..3684014 (-) 378 WP_001188905.1 DUF454 family protein -
  QDY29_RS18165 (QDY29_18165) priC 3684084..3684611 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QDY29_RS18170 (QDY29_18170) rsmS 3684625..3684786 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QDY29_RS18175 (QDY29_18175) - 3684839..3684937 (-) 99 Protein_3558 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=743112 QDY29_RS18140 WP_001195025.1 3679886..3680491(-) (recR) [Escherichia coli strain ETEC1731]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=743112 QDY29_RS18140 WP_001195025.1 3679886..3680491(-) (recR) [Escherichia coli strain ETEC1731]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443