Detailed information NTG0743079

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDY29_RS05545
• Genome accession: NZ_CP122816
• Coordinates: 1125316..1126308 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC1731
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1120316..1131308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDY29_RS05515 (QDY29_05515)	ispD	1120377..1121087 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDY29_RS05520 (QDY29_05520)	ispF	1121087..1121566 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDY29_RS05525 (QDY29_05525)	truD	1121563..1122612 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QDY29_RS05530 (QDY29_05530)	surE	1122593..1123354 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDY29_RS05535 (QDY29_05535)	pcm	1123348..1123974 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDY29_RS05540 (QDY29_05540)	nlpD	1124159..1125253 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDY29_RS05545 (QDY29_05545)	rpoS	1125316..1126308 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDY29_RS05550 (QDY29_05550)	ygbN	1126402..1127766 (-)	1365	WP_000104456.1	GntP family transporter	-
QDY29_RS05555 (QDY29_05555)	ygbM	1127855..1128631 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QDY29_RS05560 (QDY29_05560)	ygbL	1128636..1129274 (-)	639	WP_001278994.1	aldolase	-
QDY29_RS05565 (QDY29_05565)	otnK	1129271..1130533 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=743079 QDY29_RS05545 WP_000081550.1 1125316..1126308(+) (rpoS) [Escherichia coli strain ETEC1731]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=743079 QDY29_RS05545 WP_000081550.1 1125316..1126308(+) (rpoS) [Escherichia coli strain ETEC1731]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715