Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDX84_RS16645 Genome accession   NZ_CP122801
Coordinates   3284229..3284858 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ETEC1734     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3279229..3289858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX84_RS16630 (QDX84_16630) helD 3279471..3281525 (-) 2055 WP_282835448.1 DNA helicase IV -
  QDX84_RS16635 (QDX84_16635) yccF 3281648..3282094 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QDX84_RS16640 (QDX84_16640) yccS 3282104..3284266 (+) 2163 WP_000875061.1 YccS family putative transporter -
  QDX84_RS16645 (QDX84_16645) sxy/tfoX 3284229..3284858 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDX84_RS16650 (QDX84_16650) sulA 3285077..3285586 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QDX84_RS28705 - 3285570..3285752 (-) 183 WP_349239568.1 hypothetical protein -
  QDX84_RS16655 (QDX84_16655) - 3285734..3286714 (-) 981 WP_000019448.1 IS5-like element ISKpn26 family transposase -
  QDX84_RS16660 (QDX84_16660) ompA 3287143..3288183 (+) 1041 WP_000750416.1 porin OmpA -
  QDX84_RS16665 (QDX84_16665) matP 3288258..3288710 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=743024 QDX84_RS16645 WP_000839153.1 3284229..3284858(-) (sxy/tfoX) [Escherichia coli strain ETEC1734]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=743024 QDX84_RS16645 WP_000839153.1 3284229..3284858(-) (sxy/tfoX) [Escherichia coli strain ETEC1734]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1